Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g00178 ATGGGTTCAACGGAGTCACCGTTCAAATCAGATATATTGAAAGGAAAAGTAGCGTTGATAACAGGTGGAGCATCGGGAATCGGGTTTGAAATATCAACACAATTAGGTAAACATGGTGCTTCCGTCGCTCTCATGGGCCGTCGGAAACAAGTTCTTCAATCCGCTGTTTCTGTTCTCCAATCACTTTCGATCCCAGCGGTTGGTTTTGAAGGTGATGTCAGGAAGCAAGATGATGCCGCCAGAGTTATTGATTCCACTTTCAACCGTTTCGGTAAGATCGATATTCTTGTTAATGCTGCTGCTGGTAATTTTCTTGCTGCCGCTGAGGATCTCTCCCCAAATGGATTTCGAACCGTTTTGGATATTGATTCTGTTGGCACATTCACTATGTGCCATGAAGCACTTAAATATCTCAAGAAAGGGGGACCAGGAAGGGACTCTTCTAGTGCTGGTGGATCAATAATTAACATTAGTGCTACCTTGCATTATACAGCTTCTTGGTATCAAATTCACGTATCTGCAGCTAAGGCAGCTGTTGATGCCACTACAAGAAACTTGGCACTGGAATGGGGAACAGATTATGATATCAGAGTCAATGGGATTGCACCAGGTCCAATAAGTGGCACTCTTGGCATGAGTAAACTGGCTCCTGAAGAATTAGGTAACAAAGCCAGAGAAGAAATGCCTCTATTTAAAATTGGGGAGAAATGGGATATTGCAATGGCTGCTCTCTACCTAGTATCAGATGCAGGAAAATTCATTAATGGCGACACTATGATAGTTGATGGTGGACTTTGGCTGAGTCGGCCTCGTTATATACCGAAAGAGGCAGTGAGGCAAGTATCACGGGCACTAGAAAAGAAATCCAGAAATGAACCAGTTGGTGTTCCCAAAAGCAAGCTGTGA 906 0.4382 MGSTESPFKSDILKGKVALITGGASGIGFEISTQLGKHGASVALMGRRKQVLQSAVSVLQSLSIPAVGFEGDVRKQDDAARVIDSTFNRFGKIDILVNAAAGNFLAAAEDLSPNGFRTVLDIDSVGTFTMCHEALKYLKKGGPGRDSSSAGGSIINISATLHYTASWYQIHVSAAKAAVDATTRNLALEWGTDYDIRVNGIAPGPISGTLGMSKLAPEELGNKAREEMPLFKIGEKWDIAMAALYLVSDAGKFINGDTMIVDGGLWLSRPRYIPKEAVRQVSRALEKKSRNEPVGVPKSKL 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g00178 301 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 14 267 IPR036291 -
Vivi7g00178 301 Pfam Enoyl-(Acyl carrier protein) reductase 22 265 - -
Vivi7g00178 301 PRINTS Glucose/ribitol dehydrogenase family signature 146 162 IPR002347 -
Vivi7g00178 301 PRINTS Glucose/ribitol dehydrogenase family signature 17 34 IPR002347 -
Vivi7g00178 301 PRINTS Glucose/ribitol dehydrogenase family signature 194 211 IPR002347 -
Vivi7g00178 301 PRINTS Glucose/ribitol dehydrogenase family signature 229 249 IPR002347 -
Vivi7g00178 301 PRINTS Glucose/ribitol dehydrogenase family signature 172 191 IPR002347 -
Vivi7g00178 301 PRINTS Glucose/ribitol dehydrogenase family signature 91 102 IPR002347 -
Vivi7g00178 301 FunFam Short-chain dehydrogenase reductase 4 270 - -
Vivi7g00178 301 CDD TER_DECR_SDR_a 13 267 - -
Vivi7g00178 301 Gene3D - 3 290 - -
Vivi7g00178 301 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 152 160 IPR002347 -
Vivi7g00178 301 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 172 191 IPR002347 -
Vivi7g00178 301 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 91 102 IPR002347 -
Vivi7g00178 301 PANTHER PEROXISOMAL 2,4-DIENOYL-COA REDUCTASE 3 289 IPR045017 GO:0008670|GO:0009062
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g00178 Vivi-Chr7 10376917 10378858 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g00178 5 301 Acyl Lipid Metabolism Gene Families AT3G12800 79.798 2.82e-165 459