Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g00102 ATGGATCTAAATTATTTCCTCAAGTTTATATTGGTAATGATAATACTCCTCTTAGGGTTTCTTGCTTGGCTAGAACACAAGGTAGCAAACTCAAACGAAGAGGTGATGCAAGTGAGTGATGAAATAAACATAGTGTTTGAACAAGATGGTGAGAAGAATGAATTTTGTGTTTGTTCCTTTTGTGGCAAATTAAGAAACATAGTCACAAGATGCTCACGATGCAAAAATGCTATATATTGTTCAAAGGCTTGCCATGTCATGCATTGGAGATTTAGCCATAAAGACGAATGTGTTGAGATAGTTTCTGCAAAAGATCATGTTGGAGTACAATGCTTTCTCTTGGAGCCTGAAAATGAAAGTTCAAAGTACTCATTGAATGAAGAGGATGAGGGAGATGTTTACTATATTGAAGGAGGAGAAAATAATGATGAGTCGATTAGAAGAAAGTTTCAAGATGATGATGGATGTGCAGTTTGTGGCATTTCATGCTCCAAAAAATGCTCAAGATGTAAAGCTATAAAATATTGCTCACAAACATGCCAACATTTTGATTGGAAATCAGGACATAAATTCCAATGTTGTGTTAACAAGAAAGCTTCAACTCAAGAAACAACAAACAATCAAAGATGGCATGACAGTGAAAATGTTATAATGCCCCCAAATTTAGATGAGGTGAAAGATGATGATCCTCTTTGCTTGGAATTTTATTCAGAAGAAAACACCAACACCAAAGCTCTGATTTTAAGTTCTCAGGAAGCTAGCAACAAAGTCCATCAAGTTGAAGAACAATTGAGAAACCTAAAACAAGAATTAGAAATTATCAAAAGTGAAAATATATCACTGCAATCAAAGAATAACTATTGGGAAGTTAGAGCAAAGTATTCTGCTGATAGACTCTACAGTTTCAAGAAAGAAAATGAACACCAGTTGTTGATTTTGAAGCGTGAAAATGAATTGATGTCAAATGCTGAGAAACAAGCTCGTCAAATGGTTACTAATTTATCTCAAAGGATACACTGTTTGCAGATTTCAGTTGAAACAGAAGTGGCAGAGAGGAAAAAACAAGAAGAAATTATACATATGCTACAGAATGAATGTAATAAGGCTAAAAGAGAGTTTCAAGAGCAAAACAATTATGTTGAAAGGCTTAGGCAGAAGCTTGATAATGTCAGTAAATTTCCTATGAAAATAGCTCAAGAGTCAGGGGAAAAAATAGCCATTACTTCCAGTCTAATGTCAGCTGGTGAATCCAAAGTTCCTGCTGCTGAGGTATCCAAGACAATCAGTTTAAGCAGAAATCCAACCTTAACTAGTCAGTGTTGTACAATTTGCTTAGGCAGTGAGAAGGACATGGCCTTCGGTTGTGGGCACATGACTTGCAGAGAATGTGGAACAAAAATTCGCAAGTGTCATATATGTCGAAAGAAGATCGTTAATCGTATCAGATTGTTTCCTGGCTGA 1461 0.3573 MDLNYFLKFILVMIILLLGFLAWLEHKVANSNEEVMQVSDEINIVFEQDGEKNEFCVCSFCGKLRNIVTRCSRCKNAIYCSKACHVMHWRFSHKDECVEIVSAKDHVGVQCFLLEPENESSKYSLNEEDEGDVYYIEGGENNDESIRRKFQDDDGCAVCGISCSKKCSRCKAIKYCSQTCQHFDWKSGHKFQCCVNKKASTQETTNNQRWHDSENVIMPPNLDEVKDDDPLCLEFYSEENTNTKALILSSQEASNKVHQVEEQLRNLKQELEIIKSENISLQSKNNYWEVRAKYSADRLYSFKKENEHQLLILKRENELMSNAEKQARQMVTNLSQRIHCLQISVETEVAERKKQEEIIHMLQNECNKAKREFQEQNNYVERLRQKLDNVSKFPMKIAQESGEKIAITSSLMSAGESKVPAAEVSKTISLSRNPTLTSQCCTICLGSEKDMAFGCGHMTCRECGTKIRKCHICRKKIVNRIRLFPG 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g00102 486 ProSiteProfiles Zinc finger MYND-type profile. 156 193 IPR002893 -
Vivi7g00102 486 SUPERFAMILY HIT/MYND zinc finger-like 55 100 - -
Vivi7g00102 486 Coils Coil 345 386 - -
Vivi7g00102 486 Pfam MYND finger 156 193 IPR002893 -
Vivi7g00102 486 Pfam MYND finger 58 97 IPR002893 -
Vivi7g00102 486 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 430 485 IPR013083 -
Vivi7g00102 486 ProSiteProfiles Zinc finger MYND-type profile. 58 97 IPR002893 -
Vivi7g00102 486 Coils Coil 250 284 - -
Vivi7g00102 486 SUPERFAMILY RING/U-box 440 480 - -
Vivi7g00102 486 ProSiteProfiles Zinc finger RING-type profile. 441 474 IPR001841 -
Vivi7g00102 486 Gene3D - 45 103 - -
Vivi7g00102 486 Gene3D - 140 200 - -
Vivi7g00102 486 PANTHER CASPASE REGULATOR, RING FINGER DOMAIN-CONTAINING 159 484 - -
Vivi7g00102 486 SUPERFAMILY HIT/MYND zinc finger-like 155 197 - -
Vivi7g00102 486 Coils Coil 313 333 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g00102 Vivi-Chr7 5451665 5457967 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g00102 135 193 Miscellaneous Gene Families AT4G31670 44.262 1.80e-09 58.2