Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g00097 ATGAGGCTGATGATGAAGAAGAAGAACCGGAGTATCCTGCGGACGAACATCAGCTCAGTCACCGGGCATCCGAGCACCGCGGTGCGTCTCCAAGAAACGTTATTCCGTGTGCCTTCTGTGGCAATTCAAGCACCACAAGATGTGCTCGCTGCAAGGTTGCTAGATATTGGAGGATGCCAAATAGAACATTGGAGGTCATGGCATAGATATGAATGCATTGAATTAGAGAGTGAAAAAGATGAAGCAAGAAATGTTGATCAACACCAAACCCATATGCTTGTCGACGACAAGTATGATAATGAGAATATCCGTAATGTGGAGATGAATGTATCAAGTAGCAGCAGTAGTGTGAAGAACTGTGAATCTGATGTTGGGTGTGAACAATGTGGAAGACCAAGTACCACCAAATGTTCACGATGTAAATCTGTCGGATACTGCTCTACAAAGTGTTTGATTACCAACTGGAGATGGCATAAATATAATTGCACTGCAGGAGATGCCAATTCAGCTCAACCAGAAACACCTAATGGAAATGTTGAATTGCTCAATCACTCAAATGAAGAACAAGAGAATATTCATTCACCTAGGCCACTTTATTTGGAGCTTCATCCTGTTACTACAACTACCAATGAAGCACAAGTGCATAAAACTCAATGGGGGGAACATATTGAAGATGAACTAGTAAAGTCTAGGAAGGAGAACTTGGAACTAAGGTCAGAGCGTGACGAGTGGAAGAAGCGGGCGAGTTTCGCTAGAGAAAGATTTCAAAGTTTCAAGGAAGAATCTGAAAAACAAATTGCAGCACAAGATAACATTGCAGAGAAGAGAAAGTTAGAAAAACATATACAAATGGTAGAGAGCGAATGTACTAAGCTGAAGAAAGAGCTAGAAGAACAACACAAAGATATTCAATATCTTACACTAGAATCTAATAGGAGTCACGAGATGGCACAAATTGCCATAAGAGAAGTTGAAGCAATAAAACAAGAGCTTATAGAAGAGCGAGAAAATGTTGAACGAATTAAAGCGAATTTTACTAGAGATATTACATTCTCCAACTCAAAAGCTATTGTTGCTGAGGCAAAACTCAGTGATCTTCAGAGAAAAATAAAGTTGAGAGAGTATAAGGCATGCACTATATGTCTGACTAATGAGAAGGACATGGCCTTTGGGTGTGGACACATGACTTGTAGAGACTGTGGATCAAAATTATCAAAGTGTCCAATATGTCGAGAGCAGATTTCAAGTCATATTAAATTGTTTTCTGGCTAA 1272 0.3986 MRLMMKKKNRSILRTNISSVTGHPSTAVRLQETLFRVPSVAIQAPQDVLAARLLDIGGCQIEHWRSWHRYECIELESEKDEARNVDQHQTHMLVDDKYDNENIRNVEMNVSSSSSSVKNCESDVGCEQCGRPSTTKCSRCKSVGYCSTKCLITNWRWHKYNCTAGDANSAQPETPNGNVELLNHSNEEQENIHSPRPLYLELHPVTTTTNEAQVHKTQWGEHIEDELVKSRKENLELRSERDEWKKRASFARERFQSFKEESEKQIAAQDNIAEKRKLEKHIQMVESECTKLKKELEEQHKDIQYLTLESNRSHEMAQIAIREVEAIKQELIEERENVERIKANFTRDITFSNSKAIVAEAKLSDLQRKIKLREYKACTICLTNEKDMAFGCGHMTCRDCGSKLSKCPICREQISSHIKLFSG 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g00097 423 ProSiteProfiles Zinc finger RING-type profile. 378 411 IPR001841 -
Vivi7g00097 423 ProSitePatterns Zinc finger MYND-type signature. 126 162 IPR002893 -
Vivi7g00097 423 SMART ring_2 378 410 IPR001841 -
Vivi7g00097 423 SUPERFAMILY HIT/MYND zinc finger-like 125 164 - -
Vivi7g00097 423 SUPERFAMILY RING/U-box 377 417 - -
Vivi7g00097 423 Coils Coil 314 348 - -
Vivi7g00097 423 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 361 422 IPR013083 -
Vivi7g00097 423 PANTHER CASPASE REGULATOR, RING FINGER DOMAIN-CONTAINING 228 421 - -
Vivi7g00097 423 ProSiteProfiles Zinc finger MYND-type profile. 126 162 IPR002893 -
Vivi7g00097 423 Gene3D - 109 167 - -
Vivi7g00097 423 Coils Coil 275 302 - -
Vivi7g00097 423 Coils Coil 227 261 - -
Vivi7g00097 423 Pfam Zinc finger, C3HC4 type (RING finger) 376 416 - -
Vivi7g00097 423 Pfam MYND finger 126 162 IPR002893 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g00097 Vivi-Chr7 5258377 5261805 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g00097 126 177 Miscellaneous Gene Families AT4G31670 45.283 2.08e-06 48.1