Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g00059 ATGGGTGTAGTGATAATAGACGGCACCACCGTAACAAACTTCATAGCCGACGACGAGCGTTTCACAAACAGCGTCAACGAACAGTTTTCATCTCTCGATCTCAACAACGACGGCGTTCTATCACGCGCAGAGCTTCGCACGGCCTTCGAATCGATGAGACTGATCGAGGCACACTTCGGCATCGACGTATCCACCCCGCCGGAGCAACTCACGCGCCTTTACGACTCCGTGTTCGACAGTTTTGACGGTGATGGAAGTGGCACTGTAGATCGTGACGAGTTTAAAGCCGAGATGAAGAAGATCATGCTCGCGATTGCTGATGGATTGGGATCTTCGCCGATTCAGATGGTTCTGGAAGATGATTCGCAGAGTCTTCTTCAGAAAGCTGCGGATCTTGAAGCTTCTAAGTACGCTGCCGTTTGA 423 0.5106 MGVVIIDGTTVTNFIADDERFTNSVNEQFSSLDLNNDGVLSRAELRTAFESMRLIEAHFGIDVSTPPEQLTRLYDSVFDSFDGDGSGTVDRDEFKAEMKKIMLAIADGLGSSPIQMVLEDDSQSLLQKAADLEASKYAAV 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g00059 140 CDD EFh 29 99 IPR002048 GO:0005509
Vivi7g00059 140 Gene3D - 53 129 - -
Vivi7g00059 140 ProSiteProfiles EF-hand calcium-binding domain profile. 20 55 IPR002048 GO:0005509
Vivi7g00059 140 PANTHER CALCIUM-BINDING EF-HAND FAMILY PROTEIN-RELATED 1 121 - -
Vivi7g00059 140 Gene3D - 16 52 - -
Vivi7g00059 140 ProSitePatterns EF-hand calcium-binding domain. 82 94 IPR018247 -
Vivi7g00059 140 Pfam EF-hand domain pair 26 98 IPR002048 GO:0005509
Vivi7g00059 140 SUPERFAMILY EF-hand 18 103 IPR011992 -
Vivi7g00059 140 ProSitePatterns EF-hand calcium-binding domain. 33 45 IPR018247 -
Vivi7g00059 140 ProSiteProfiles EF-hand calcium-binding domain profile. 69 104 IPR002048 GO:0005509
Vivi7g00059 140 SMART efh_1 24 52 IPR002048 GO:0005509
Vivi7g00059 140 SMART efh_1 73 101 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g00059 Vivi-Chr7 3203503 3204132 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g00059 1 136 EF-hand Containing Proteins AT2G44310 67.647 4.43e-66 195