Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g05296 ATGGAAGGGTTAACTCCAAGTTCATGCACTAGGGCTGAAATATTAGAGAAGAAAACAAAAACAGAAGAAGCATTGAAATTGAATTGTCCAAGGTGCAAATCAACAAACACAAAGTTCTGTTATTACAACAACTATAGTCTCACACAACCAAGATACTTCTGCAAAACTTGCAAAAGGTATTGGACACAAGGTGGCTCACTCAGAAACATCCCTGTTGGAGGTAGTTCAAGGAAGAACAACAAACTCATAGCATCATCATCAGCTATTTCTTCATATAACATGATTAAAGGCCATGATCTTAGTTTGGATTCTAATTGTATTCCTAATTCATTGATTATGATGTCAAGTTCAAGCTCAAATGGACAATACCATCCATGGTTTTCCATGCAACCAAATCATGGAGAGATGAAGCAAGTTTGTAATACAAATGATCATGTTGATCAAGTGGAACATAATGAAGAACAAGAAAATTCAGCAAGGTATGATTGGAATGGAGTCATAGGTGAAGGGTCATCATGGTAA 522 0.3621 MEGLTPSSCTRAEILEKKTKTEEALKLNCPRCKSTNTKFCYYNNYSLTQPRYFCKTCKRYWTQGGSLRNIPVGGSSRKNNKLIASSSAISSYNMIKGHDLSLDSNCIPNSLIMMSSSSSNGQYHPWFSMQPNHGEMKQVCNTNDHVDQVEHNEEQENSARYDWNGVIGEGSSW 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g05296 173 ProSiteProfiles Zinc finger Dof-type profile. 27 81 IPR003851 GO:0003677|GO:0006355
Vivi6g05296 173 Pfam Dof domain, zinc finger 27 81 IPR003851 GO:0003677|GO:0006355
Vivi6g05296 173 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 20 136 IPR045174 GO:0003700|GO:0006355
Vivi6g05296 173 ProSitePatterns Zinc finger Dof-type signature. 29 65 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g05296 Vivi-Chr6 157722892 157724502 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g05296 12 109 C2C2-Dof Transcription Factor Family AT3G61850 61.386 4.18e-34 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Vivi6g05296 zf-Dof 4.7e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g05296 - - psat:127128863 278.485
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi6g05296 6 157722892 157724502 Vivi7g04234 7 110574802 110577018 PCT