Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g01870 ATGGTTTATACTTCTCTCCCACCATATATGGATCAAACAAATTGGCATCAACAACAACAAAATCATCATCAAGTGGCTAACGGTTCTAGTGTCAACACTCCTTTTCTAATTCCACAACCACAGCCTCCGCCATCGAACCTGACTCCATCGCAGCCTCATGGAAGCTCGATCAGGCCAGGTTCGATGGCTGATAGGGCTAGGATGGCGAACATACCTATGCAAGAACTGTCACAAAAATGTCCAAGATGTGATTCAACCAACACAAAGTTTTGCTACTTTAACAACTACAGTCTCTCCCAGCCTCGCCACTTCTGCAAGACCTGTAGACGGTATTGGACGAGGGGCGGCGCGCTTAGAAGTGTCCCGGTTGGAGGTGGTTGCCGAAGAAACAAAAGAACTAAGTCAAGCAGTAACAACACCTCGAAGTCACCGGTCAGCTCGGATCGTCAAACTAGCTCGGCGAACAACTCTCCAGCCGTACTCAGCTCCCAGACGCCACCGCCGATGAGATTCATGCCTCCTTTTCATCAACTCGGCGATCATCACCTCGGTGAAATAGGTCTAAACTATAATTTTCCTAGTCAAATGGGAGGTGTAGGAGACTTGAATTTCCATATTGGAAGCTCCTTAGGCGGTGGTAGAAGTGGTGGTTCTGCTTCGATTTTACCTACCGGTAACTTCGAGCAATGGAGAATGCCACAAACTCATCAATTTCCCTTCTTGACAAGCTTAGAAGCTTCTTCTTCACATGGAATGTTGTATCCATTTGGTAATGATCAAGAACATGCATATGGTGGTGTCTCTAAGGTATTAACAGCTTCTAGTGTGAAAATGGAAGAGAATCAATCTAAACAATTCTTGGGAATGATCAATAGTAACAACAACTCCAACAACAATAACAATAATAATAATCATAATAGTGAACAATATTGGAATGCTTCTAATGGTGATGGTGGAGGTGCTACTTCAACATGGAATGATCTTTCACCTTTTAACTCTTCTTCAGCTGCTACTACAAATTCCAACTATAGAACTTAA 1038 0.4355 MVYTSLPPYMDQTNWHQQQQNHHQVANGSSVNTPFLIPQPQPPPSNLTPSQPHGSSIRPGSMADRARMANIPMQELSQKCPRCDSTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRSVPVGGGCRRNKRTKSSSNNTSKSPVSSDRQTSSANNSPAVLSSQTPPPMRFMPPFHQLGDHHLGEIGLNYNFPSQMGGVGDLNFHIGSSLGGGRSGGSASILPTGNFEQWRMPQTHQFPFLTSLEASSSHGMLYPFGNDQEHAYGGVSKVLTASSVKMEENQSKQFLGMINSNNNSNNNNNNNNHNSEQYWNASNGDGGGATSTWNDLSPFNSSSAATTNSNYRT 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g01870 345 MobiDBLite consensus disorder prediction 122 173 - -
Vivi6g01870 345 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 46 311 IPR045174 GO:0003700|GO:0006355
Vivi6g01870 345 ProSitePatterns Zinc finger Dof-type signature. 80 116 IPR003851 GO:0003677|GO:0006355
Vivi6g01870 345 ProSiteProfiles Zinc finger Dof-type profile. 78 132 IPR003851 GO:0003677|GO:0006355
Vivi6g01870 345 MobiDBLite consensus disorder prediction 288 345 - -
Vivi6g01870 345 Pfam Dof domain, zinc finger 78 132 IPR003851 GO:0003677|GO:0006355
Vivi6g01870 345 MobiDBLite consensus disorder prediction 14 35 - -
Vivi6g01870 345 MobiDBLite consensus disorder prediction 130 164 - -
Vivi6g01870 345 MobiDBLite consensus disorder prediction 14 61 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g01870 Vivi-Chr6 83601175 83603056 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g01870 19 297 C2C2-Dof Transcription Factor Family AT3G55370 40.968 4.25e-51 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Vivi6g01870 zf-Dof 1.8e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g01870 - - vvo:131637446 610.912
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi6g01870 6 83601175 83603056 Vivi6g01870 6 83601175 83603056 ECH
Vivi6g01870 6 83601175 83603056 Vivi5g01166 5 29238391 29240224 PCT