Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g00848 ATGGTCTTCCCTTCTCTTCCAATCTATCTAGATCCAACCAACTGGTCACAACAGCAAGCAGGAATTGGTATTGAAACTCAAAATCCGTCGCATCTGCAACAACCATCAGCTTCAACTGTGGCAGGTATCACAGTTAAAGCTGATGGCTGCTATCAAGGGTCTATAAGACCAGGATCAATGACAGATCGAGCTAGGATTTCAAAAATACACCAAAACGATACCGGTGCTGCTGGAGTACAAAAATGTCCAAGATGTGAATCAACAAACACAAAATTCTGCTACTACAACAACTATAGTCTTTCGCAGCCACGCCATTTTTGCAAAGCTTGTCGTCGTTATTGGACTAGAGGTGGTGCACTTAGAAATGTTCCTGTTGGAGGTGGATGTAGAAAGAATAATAAAAGAAGCAAAGGAAATTCAGTATCAAAACCGCCGTCTAAACCTAATCGAAGTAATGATCATCGCCAGGTCGGTATTGGTGCTATTGCAGGTGGGTCTAGCTCAGAAAATGCAAAATCTAATGGTTGCAATAATTCTAATGTGAATATGGGAATGTCTCATTTTCCAACTCAATTCCCATTTTTTCCTTCTTTGCATCATTATAACAATAATGACTATGTTTCTCAAGGCATTGGTTCTATGGTGACAAAAAATATTACCAATAGTACTAATGTTGAGTTTCAACTTGGTAGAGATTCTTCGGTTGGTAATAACAATAATGGAGATTCTTTGTTGTTATCAAATGGAATCGGCGAACAATGGAGGTTTCTTAATCCGCTACAAGTTCATCATCATCAGCAACAACCGCAACCGCAACAACAGCAGCAACAACAACAAGGACATAATGTTCAACAATTTCCTTTCATGACAAATTTGGAGCCACAAGTTGGATTATTTCAATTTGGTGGAGAAAATAATGGTGAAACTTCAAGTTTTATAAGTTCTAAGGCAATGGATTCTTCAAGTGCTAGTATTGGAATGGTGAAAATGGAAGAAAATAATCATCAAAGGTTGAGTTTGCCAAAGATTCTCTTGAGTGGTTCAGGAAATAGTAATGATCTATTTTGGAATGAAGTTCCTAGTTTCACTCCTTCATCAAGTAACTTATTATGA 1113 0.3792 MVFPSLPIYLDPTNWSQQQAGIGIETQNPSHLQQPSASTVAGITVKADGCYQGSIRPGSMTDRARISKIHQNDTGAAGVQKCPRCESTNTKFCYYNNYSLSQPRHFCKACRRYWTRGGALRNVPVGGGCRKNNKRSKGNSVSKPPSKPNRSNDHRQVGIGAIAGGSSSENAKSNGCNNSNVNMGMSHFPTQFPFFPSLHHYNNNDYVSQGIGSMVTKNITNSTNVEFQLGRDSSVGNNNNGDSLLLSNGIGEQWRFLNPLQVHHHQQQPQPQQQQQQQQGHNVQQFPFMTNLEPQVGLFQFGGENNGETSSFISSKAMDSSSASIGMVKMEENNHQRLSLPKILLSGSGNSNDLFWNEVPSFTPSSSNLL 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g00848 370 MobiDBLite consensus disorder prediction 124 175 - -
Vivi6g00848 370 ProSiteProfiles Zinc finger Dof-type profile. 80 134 IPR003851 GO:0003677|GO:0006355
Vivi6g00848 370 MobiDBLite consensus disorder prediction 262 282 - -
Vivi6g00848 370 Pfam Dof domain, zinc finger 79 134 IPR003851 GO:0003677|GO:0006355
Vivi6g00848 370 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 71 281 IPR045174 GO:0003700|GO:0006355
Vivi6g00848 370 MobiDBLite consensus disorder prediction 133 153 - -
Vivi6g00848 370 ProSitePatterns Zinc finger Dof-type signature. 82 118 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g00848 Vivi-Chr6 25666547 25668510 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g00848 1 137 C2C2-Dof Transcription Factor Family AT2G37590 50.331 2.96e-37 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Vivi6g00848 zf-Dof 3.2e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g00848 - - cam:101502096 474.552