Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g00355 ATGTTGGAGACAAAAGACTCTGCCATCAAACTCTTCGGAAAAACAATTCCGGTTAAGGAGATTCTTGTCGGTCTTTCACCTTTGTCTTCTGCTGATGTTGTTGTTGATCACAGTATTCATGATCATAATCATGATTCTTCTACAAACTCATCTAGAGAGTCTCATAATAGCATTGAAAAGGATACATCGGGAGAAAAACCAATTGATGAAAAGAATGAAGATGGAGCCCCTACACAATCGACTGAAGAATTCACCAATCCAGATGCAGCCTCTAGGACTGGCGAAGAATCTGTTACAGCGTCAACTGAAAAAGAGGTTGCTACATTGAAAACTTCGAAGACTGAAGAAGAACAGGACGAAACGAGTAATTCACAGGAAAAGAGCCTCAAAAAACCCGACAAAATAATCCCGTGTCCACGCTGTAGTAGCATGGACACAAAGTTCTGCTACTATAACAATTACAATGTAAACCAACCTCGCCACTTTTGCAAAAATTGTCAGAGATATTGGACTGCCGGTGGAACCATGAGAAACGTACCCGTAGGTGCTGGTCGCAGAAGGAACAAGAGCTGTTCTTCTCACTACCGACAGATAACTGTCTCTGAAGCAACACTCCAGAATTCTCGGATACACCCTTCCTTGAAATGCAACGGCACAGTCCTTACGTTTGGATCCGATTCACCTTTATCTGAATCGATGGCATCTGTTTTGAAACTTGCTCATAAACCTGAAGAGCTAAGAATTCGTGTTCCGCATGCAAGTGGAGAAAAATACGATGATCAATCTAATAAATCATCGGTTACCTCCGTAAAGTCGACAGAAGGTGCAAGCACGAACGTATCACAAGAACAAGCTAGGCAGTACAGCCAAAGCTTCCCGCCACAAGGTCACTACTTTCCTTCCGGAACTCCTTGTCCTTTCCCATGGAATCCAATGCAATGGAGATCACCGGTTCCACCACCTGCGTTTTCTCCACCGGGATTTTCTTTGCCGCTCTATCCCACAACAAGTTACTGGGGTTGTGCCGTGCCAGGTGGATGGAACGTCCCGTGGCAAGCACAACCTTCATCACCGAACGGTACCGGCCCTAACTCTAGTCCAAACTCTCCAACCTTAGGTAAACATTCAAGGGAAGACGGTAGGAAAGAAAGTAGCATGGAAAAAAGTCTCTGGTTTCCAAAAACTTTGAGGATCGATGACTCGGGAGAAGCAGACAAAACCCCTTTCTGGACAACACTCGGGATTAAAAACGACACCGCCAGTCCAACTCCATCAGGAAGACTCTTTCAAGCATTCCCTTCAAAGATAGACAACAAAAATGACTCAGACCAAGTATCTTCAGTCTTGCAGGCCAATCCGGCCGCAATGTCTAGGTCACATAACTTTCACGAGACTTCGTAG 1401 0.4483 MLETKDSAIKLFGKTIPVKEILVGLSPLSSADVVVDHSIHDHNHDSSTNSSRESHNSIEKDTSGEKPIDEKNEDGAPTQSTEEFTNPDAASRTGEESVTASTEKEVATLKTSKTEEEQDETSNSQEKSLKKPDKIIPCPRCSSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRRNKSCSSHYRQITVSEATLQNSRIHPSLKCNGTVLTFGSDSPLSESMASVLKLAHKPEELRIRVPHASGEKYDDQSNKSSVTSVKSTEGASTNVSQEQARQYSQSFPPQGHYFPSGTPCPFPWNPMQWRSPVPPPAFSPPGFSLPLYPTTSYWGCAVPGGWNVPWQAQPSSPNGTGPNSSPNSPTLGKHSREDGRKESSMEKSLWFPKTLRIDDSGEADKTPFWTTLGIKNDTASPTPSGRLFQAFPSKIDNKNDSDQVSSVLQANPAAMSRSHNFHETS 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g00355 466 MobiDBLite consensus disorder prediction 260 297 - -
Vivi6g00355 466 MobiDBLite consensus disorder prediction 78 107 - -
Vivi6g00355 466 MobiDBLite consensus disorder prediction 435 466 - -
Vivi6g00355 466 PANTHER CYCLIC DOF FACTOR 2 5 466 IPR045174 GO:0003700|GO:0006355
Vivi6g00355 466 MobiDBLite consensus disorder prediction 350 388 - -
Vivi6g00355 466 MobiDBLite consensus disorder prediction 350 373 - -
Vivi6g00355 466 MobiDBLite consensus disorder prediction 252 297 - -
Vivi6g00355 466 MobiDBLite consensus disorder prediction 40 77 - -
Vivi6g00355 466 Pfam Dof domain, zinc finger 134 190 IPR003851 GO:0003677|GO:0006355
Vivi6g00355 466 ProSiteProfiles Zinc finger Dof-type profile. 136 190 IPR003851 GO:0003677|GO:0006355
Vivi6g00355 466 ProSitePatterns Zinc finger Dof-type signature. 138 174 IPR003851 GO:0003677|GO:0006355
Vivi6g00355 466 MobiDBLite consensus disorder prediction 416 466 - -
Vivi6g00355 466 MobiDBLite consensus disorder prediction 40 135 - -
Vivi6g00355 466 MobiDBLite consensus disorder prediction 374 388 - -
Vivi6g00355 466 MobiDBLite consensus disorder prediction 108 134 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g00355 Vivi-Chr6 8707368 8710231 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g00355 6 466 C2C2-Dof Transcription Factor Family AT5G39660 42.000 2.46e-97 298
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Vivi6g00355 zf-Dof 5.6e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g00355 - - mtr:11410541 665.611