Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g04732 ATGAGTGAAACGAACAAGATGGTTCCTGTCTGGTTACTCACCGTTACAGTAGCGACTTTACTGTTAACAACACAAACATATGCTCAACCAGAAGCAAATTTCAAATGCGCCACCGAAAGCGCCACGTGCCGCAGTCTAGCCGACTACTCTTCCACCAACACAACAACCTTAAAAGAAATCGCAACCCTGTTCGGCGTGAAACACTTCCTCGACCTCCTCGGAGCCAACAACCTCCCATCCAACACCAAAAACACTTACCCACTAACCGCCAAACAATCCATCAAGGTTCCATTTCCCTGCAAATGCGGTAACTTAACCGGTAAATCCAACAACATACCGCGGTACAAGATAAAACCAGGTGACACGTTAAGCCAAATAGCGAATGTTCGTTTTGCTGGTTTGGTCAAGTATCAACAGATCCAAACCGCTAATAAGATACCAGATGCTAACAATATAACCGCCGGTGATACACTTTGGATCCCTTTGCCTTGTAGCTGTGATAAAGTGGGTGGGAGCAGTGTGATGCACTATGCACATCTTGTGGAATCTGGTAGTAGCATTGATGCTATTGCTCAAGAATATGGCACAACATCACAAACGCTACTCACTATCAATGGTATTGATGATCCTAAAAAACTTCAAGCCGGTCAAGTTCTAGATGTTCCTCTTCCAGTTTGTAACACAAATGTGAGGAATGATTCGGTGGATTTTCCATTGCTTGTACCAAATGGGACTTATTACTATACTGCCAATAATTGTGTCAAATGTAAATGTGACTCTGCTGGTAGTAGTAACAACAGCAATTCTATGTTACAATGTGAGGAGTCGGGACTAAAACCGATAAATCAGTGGTCAGTTTGTCCGTCTGCGAAATGCTCCAAGAATGTGTTGATTGGGAACATTACGTCTACTGATTCGTGTAACCGGACGTTTTGTGATTATGTGGGTTATACTTCTCGCAATATCTCTGTCGATCTTGTAACTCAAAACACTTGCGCTGTGGCACCAAGTGGTTCAGGTGGTTCGGGTTCAGGTGGATCAGGGGCATCTAGGAGCATCTTGAATGGCTTGGCTTGGAATAAGCTTCTTATTCTCATTCACTTCCTTCTGTTTTTTGTTTATCTTTTGTAG 1131 0.4332 MSETNKMVPVWLLTVTVATLLLTTQTYAQPEANFKCATESATCRSLADYSSTNTTTLKEIATLFGVKHFLDLLGANNLPSNTKNTYPLTAKQSIKVPFPCKCGNLTGKSNNIPRYKIKPGDTLSQIANVRFAGLVKYQQIQTANKIPDANNITAGDTLWIPLPCSCDKVGGSSVMHYAHLVESGSSIDAIAQEYGTTSQTLLTINGIDDPKKLQAGQVLDVPLPVCNTNVRNDSVDFPLLVPNGTYYYTANNCVKCKCDSAGSSNNSNSMLQCEESGLKPINQWSVCPSAKCSKNVLIGNITSTDSCNRTFCDYVGYTSRNISVDLVTQNTCAVAPSGSGGSGSGGSGASRSILNGLAWNKLLILIHFLLFFVYLL 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g04732 376 CDD LysM 115 160 IPR018392 -
Vivi5g04732 376 ProSiteProfiles LysM domain profile. 177 221 IPR018392 -
Vivi5g04732 376 SUPERFAMILY LysM domain 177 223 IPR036779 -
Vivi5g04732 376 Gene3D LysM domain 112 167 IPR036779 -
Vivi5g04732 376 SMART LysM_2 178 222 IPR018392 -
Vivi5g04732 376 SMART LysM_2 114 161 IPR018392 -
Vivi5g04732 376 SUPERFAMILY LysM domain 114 162 IPR036779 -
Vivi5g04732 376 ProSiteProfiles LysM domain profile. 113 160 IPR018392 -
Vivi5g04732 376 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 2 11 333 - -
Vivi5g04732 376 CDD LysM 179 221 IPR018392 -
Vivi5g04732 376 Gene3D LysM domain 168 234 IPR036779 -
Vivi5g04732 376 Pfam LysM domain 180 222 IPR018392 -
Vivi5g04732 376 Pfam LysM domain 115 161 IPR018392 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g04732 Vivi-Chr5 146099630 146101531 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g04732 28 322 LysM Receptor-like Protein (LYPs) Gene Family AT2G17120 46.309 3.88e-81 250
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g04732 - - cam:101506878 500.36