Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g04662 ATGTTAGACAACAACAACACTACAAATTCTTCTTCTGATACTGCTTTTGCATTATCAGAAAATGGAGGTGCTAATAGTAATAACAAAAGAAAAAGAAGACCAGCAGGCACACCAGATCCAGATGCTGAAGTTGTGTCTCTTTCACCAAAGACTTTGTTAGAATCTGATAGATATGTATGTGAGATCTGCAACCAAGGTTTTCAAAGAGACCAGAATCTTCAAATGCATAGAAGAAGACACAAGGTACCATGGAAACTACTCAAGAGAGAAACAACACAAGGGTTAAAAAAGAGAGTTTTTGTTTGTCCAGAACCTAGTTGTTTGCACCATGATCCTTGTCATGCTCTAGGTGACCTTGTTGGAATCAAAAAACATTTTAGAAGAAAACATAGTAATCACAAACAATGGGTTTGTGAAAAATGCAACAAAGGTTATGCTGTTCAATCTGATTATAAAGCTCATATCAAAACATGTGGTACTAGAGGACATTCGTGTGATTGTGGCCGTGTCTTTTCCAGGGTGGAGAGTTTCATAGAACATCAAGATGCATGCAATGTGAGAGGGAAGAATCAACAACCAGAGTTTCAAGCAACAACAATGCAGCCTGCATGTTCTTCTAGAACAGCATCAAGCACAAGTCCATCAAGTGAGGCAAATTTTAGTGTGTCAGCCCCATTACAAGGACTACCAATTATCCTTCCAAAACCCTTTGATAAACCTTCCACCTCTCACCAACATAACTTAGAACTTCAACTCTTGTTACCCTCTTCTACAAACCCTCGAGCCGAAAAACAAAAATCGAACCACCAAAACTACGAAACAACGCATTTGAAACTTTCGATAGGAAGCAATACTAATAACGAATCAGAGAAACAAAGGAACTCCATTTCCACCACCTCTACTACATTGGAAGTAACAAGGTTGAAGGAGTACAACACTGAGGAGCTAAAGTTGGCAATGGCAGAAAAGGGCTATGCAGAAGAAGCTAGAAAAGAAGCTAAAAGACAGATTGAAATAGCTGAAGTTGAGTTTGAGAATGCTAAAAGGATAAGAAAACAAGCACAAGATGAACTTGGAAAAGCAGAAGCTTTGAGAAAACAAGCTGTTAAGAAAATAAGCAACACTGTCATGGAAATAACATGTCAAGCTTGTAAACAAAACTTCCAATCTTCAACTTCTGGTGTTCCTTCAGAAGAAACATCCATTGTTATAGGTTACATGTCCTCAGCCACCACAGAAGGAGAAGCAGAATAA 1254 0.3844 MLDNNNTTNSSSDTAFALSENGGANSNNKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRETTQGLKKRVFVCPEPSCLHHDPCHALGDLVGIKKHFRRKHSNHKQWVCEKCNKGYAVQSDYKAHIKTCGTRGHSCDCGRVFSRVESFIEHQDACNVRGKNQQPEFQATTMQPACSSRTASSTSPSSEANFSVSAPLQGLPIILPKPFDKPSTSHQHNLELQLLLPSSTNPRAEKQKSNHQNYETTHLKLSIGSNTNNESEKQRNSISTTSTTLEVTRLKEYNTEELKLAMAEKGYAEEARKEAKRQIEIAEVEFENAKRIRKQAQDELGKAEALRKQAVKKISNTVMEITCQACKQNFQSSTSGVPSEETSIVIGYMSSATTEGEAE 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g04662 417 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 12 372 IPR031140 -
Vivi5g04662 417 ProSiteProfiles Zinc finger C2H2 type domain profile. 58 80 IPR013087 -
Vivi5g04662 417 Coils Coil 323 371 - -
Vivi5g04662 417 Pfam Zinc finger, C2H2 type 58 80 IPR013087 -
Vivi5g04662 417 SMART c2h2final6 136 163 IPR013087 -
Vivi5g04662 417 SMART c2h2final6 100 130 IPR013087 -
Vivi5g04662 417 SMART c2h2final6 58 80 IPR013087 -
Vivi5g04662 417 FunFam protein indeterminate-domain 12-like 37 106 - -
Vivi5g04662 417 MobiDBLite consensus disorder prediction 1 44 - -
Vivi5g04662 417 MobiDBLite consensus disorder prediction 259 301 - -
Vivi5g04662 417 SUPERFAMILY beta-beta-alpha zinc fingers 57 156 IPR036236 -
Vivi5g04662 417 MobiDBLite consensus disorder prediction 1 31 - -
Vivi5g04662 417 Gene3D Classic Zinc Finger 36 101 - -
Vivi5g04662 417 ProSitePatterns Zinc finger C2H2 type domain signature. 60 80 IPR013087 -
Vivi5g04662 417 MobiDBLite consensus disorder prediction 272 301 - -
Vivi5g04662 417 MobiDBLite consensus disorder prediction 195 221 - -
Vivi5g04662 417 Gene3D Classic Zinc Finger 121 199 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g04662 Vivi-Chr5 145268057 145271396 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g04662 1 417 C2H2 Transcription Factor Family AT2G01940 53.996 2.18e-156 447
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vivi5g04662 zf-C2H2 0.0039 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g04662 5 145268057 145271396 Vivi5g04662 5 145268057 145271396 ECH