Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g04079 ATGTTTGGTAATGGTAACTGTGATGTTGATAATGAGAAAACCATAGTCACTTCTAGCAAATGGACACAGTGTGAGATAGATGATCATAAGGTTTCAATGGCTTCTTCAACCGGTGGTAATAGGGTTATGGAAAAACCAGGTCAAGAGCTTCTTCAACAACAGCAACAAGCTTTGAGATGTCCACGTTGTGATTCATCCAACACTAAATTCTGTTACTACAATAACTACAGTTTAACACAGCCAAGACACTTCTGCAAAGCCTGTAAAAGATACTGGACAAGAGGTGGAACACTCAGAAATGTTCCTGTTGGTGGTGGTTGCAGAAAAAACAAACGCCTTAAACGACCAACATACTCTTGTTCCAACAACAACAACATTGATTCTTCTGCTTCTCCTTCTTCTTCAAATCCTTCTAGTGTTGTTGCTAATCCAAACCCTCCTTCTCAATCTCAACAACAGCAACAGCAACAGCAGCAACAACATCATAGTTTTGATATTGCTGCTACCTCAAACCATATCAATACTATGCTTTATGGTGGTAATAACTCTTGTCATGATGTTATGAATTTTCCTTTTTCAACAAGGTTTAATTCTACTAGAGTTTCAAATCCAGTTTCTGGTTATGATAATCTTCACCAGAATGGTCTTGGATTAGGTTTTTCATCTGGGATATTAATGTCTGCTGGAGTAGGAGTAGGAGGAGAAGGAGGAGAAGTTAATCTTAATCATCATCATCATCATCAACATCATCATGATGAGGGTAGTTACAGAAATGGGTTTAGTACTTCAAATAATAACAATTACAGTTCCATCTTTGGTTCTACTTCTACTTCATCTACTCCTGTTATGGCTTCTCTACTTAGCTCTACACTACTGCAACAGAAGTTCATGAGTACTGGTGGTGGAATAAAAGGTGGTAGTGGTGGTGGTGGTGGTGGTGATGATGATGCTTTTCATCATCATCATGAGATGGATTCAAAAGAAGTGAAACTAGGTGAAGGGCTACAAAATAGGTTGGATCAGTGGAATATGAATAACCTGAATGGAAATGGTGGTGCTGCTTTCCAAAACCAGATGGAGAATATGGGTTTGTCTGATAACAATTCTTCTCTTTATTGGAATAATAATCACAACAGCAGCAACAACAACACAGCAGCAGCAGCAGCAGCAACAGGTTTGGGTAGTGTTTGGAGTACTGATCAACCTGGTTCTAATTCAGTTACATCTCTGATCTAG 1236 0.3883 MFGNGNCDVDNEKTIVTSSKWTQCEIDDHKVSMASSTGGNRVMEKPGQELLQQQQQALRCPRCDSSNTKFCYYNNYSLTQPRHFCKACKRYWTRGGTLRNVPVGGGCRKNKRLKRPTYSCSNNNNIDSSASPSSSNPSSVVANPNPPSQSQQQQQQQQQQHHSFDIAATSNHINTMLYGGNNSCHDVMNFPFSTRFNSTRVSNPVSGYDNLHQNGLGLGFSSGILMSAGVGVGGEGGEVNLNHHHHHQHHHDEGSYRNGFSTSNNNNYSSIFGSTSTSSTPVMASLLSSTLLQQKFMSTGGGIKGGSGGGGGGDDDAFHHHHEMDSKEVKLGEGLQNRLDQWNMNNLNGNGGAAFQNQMENMGLSDNNSSLYWNNNHNSSNNNTAAAAAATGLGSVWSTDQPGSNSVTSLI 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g04079 411 ProSiteProfiles Zinc finger Dof-type profile. 58 112 IPR003851 GO:0003677|GO:0006355
Vivi5g04079 411 Pfam Dof domain, zinc finger 56 112 IPR003851 GO:0003677|GO:0006355
Vivi5g04079 411 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 46 263 IPR045174 GO:0003700|GO:0006355
Vivi5g04079 411 MobiDBLite consensus disorder prediction 118 163 - -
Vivi5g04079 411 ProSitePatterns Zinc finger Dof-type signature. 60 96 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g04079 Vivi-Chr5 137019396 137023194 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g04079 28 116 C2C2-Dof Transcription Factor Family AT5G65590 62.921 1.81e-35 131
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Vivi5g04079 zf-Dof 6.9e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g04079 - - vvo:131602670 634.409
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g04079 5 137019396 137023194 Vivi5g04079 5 137019396 137023194 ECH
Vivi5g04079 5 137019396 137023194 Vivi1g08142 1 230242640 230245021 PCT