Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g03801 ATGTCTGATTCTTTCTGTAGTTTTCTCTCTGCTACTCCAAATTCCAACCATAATTCTCATGCACCTCCAAAACTCTCTTCCATAGTTCAACCTTATTGTCTTTGCACCCATTGTAATCATCTCCTCCCCTTCAATCACCACGCCGGAACATTTGACTGCAGAGGCGCGGACCAAGGAACGAGCAATACTATGCAGCCACAGCAAAGCTCAAGGTGGAGTCCAACACCGGTTCAATTACTAGTCCTTGAAGAATTATATAGGAAAGGCATGAAAACACCATCAGCTGAACAAATCCAGCAAATAGCTTTGCAGCTTCGTCAATTCGGGAAGATCGAAGGGAAAAACGTGTTCTATTGGTTTCAGAATCACAAGGCAAGAGAGCGGCAGAAGCGTCGCCGCCGGGAGATGGAGGAAACAACTGGTTCTTCAACTGAAGATAAAAAAGAGAAAGACAAGTACGTTATGAGCAACTCAGAAGCTGCAGGATTGAAAGAGACAGGTAGTGGAGTTAAAGAGACAAAGAAGTGGGCAACCACTTCAAACTGCAGTGAACAAGCAGAGGAAATAGCAGAAAAAGGATCAATACAAGTTTTGAGGAAAAACATAGCTGCAGAAAGTGAAGGAAAGTGCCAAAATATTGAGATTCCTTATTACTTCACACCTTTTACTTCACCAGCATATAGAACATGTAGTAATAGTATTAGTAACACACCTCAAAGCTATGATTTATTACCATTTAACAAAGAAAATTTCAACTATTATGAAGAAGAAAATGCAGCTCCTAGGACACTTGATCTTTTTCCGGTTAAGGAGGATGAACAAGATGGAAAATCTATGTTGTGTGTTAATGATTCTATGGAGACTGAAATTGCTTCTTCCTCCAACCAGTTTTTTGAGTTTCTTCCTTTGAGAAATTGA 918 0.4031 MSDSFCSFLSATPNSNHNSHAPPKLSSIVQPYCLCTHCNHLLPFNHHAGTFDCRGADQGTSNTMQPQQSSRWSPTPVQLLVLEELYRKGMKTPSAEQIQQIALQLRQFGKIEGKNVFYWFQNHKARERQKRRRREMEETTGSSTEDKKEKDKYVMSNSEAAGLKETGSGVKETKKWATTSNCSEQAEEIAEKGSIQVLRKNIAAESEGKCQNIEIPYYFTPFTSPAYRTCSNSISNTPQSYDLLPFNKENFNYYEEENAAPRTLDLFPVKEDEQDGKSMLCVNDSMETEIASSSNQFFEFLPLRN 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g03801 305 CDD homeodomain 71 125 IPR001356 GO:0003677
Vivi5g03801 305 Gene3D - 69 136 - -
Vivi5g03801 305 SUPERFAMILY Homeodomain-like 63 132 IPR009057 -
Vivi5g03801 305 MobiDBLite consensus disorder prediction 127 155 - -
Vivi5g03801 305 FunFam WUSCHEL-related homeobox 11 69 136 - -
Vivi5g03801 305 SMART HOX_1 67 134 IPR001356 GO:0003677
Vivi5g03801 305 MobiDBLite consensus disorder prediction 131 155 - -
Vivi5g03801 305 Pfam Homeodomain 69 129 IPR001356 GO:0003677
Vivi5g03801 305 ProSiteProfiles 'Homeobox' domain profile. 65 130 IPR001356 GO:0003677
Vivi5g03801 305 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 57 295 IPR044555 GO:0003700|GO:0099402
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g03801 Vivi-Chr5 132084363 132086790 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g03801 69 210 Wox Gene Family AT3G18010 48.592 4.98e-34 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Vivi5g03801 Homeodomain 1.2e-18 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g03801 5 132084363 132086790 Vivi5g03801 5 132084363 132086790 ECH