Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g03798 ATGGACAACATTCTAGGCCTTATCAGAATTCGTATCAAAAGAGGCTCTAATCTCATAGCTCGTGATTCTCGTACCAGTGACCCTTATGTTGTTGTCACCATGGCTCAACAGACACTGAAAACTGCGGTTGTGAAAGATAACTGCCACCCCGAATGGAACGAAGAATTGACACTTTATATTCAAGATAAAGATCTTAAAACAAACACACCAATACAACTTACGGTTTGCGACAAGGACACGTTCAGTGTGGACGATAAAATGGGCGAAGCGGACATAGACATAAAGCCGTATCTTCAGTGTGTGAAGATGGGGCTGACCGATCTCCCGGAAGGACATGTTGTCAAGATGGTTCAACCAGATAGGACTAACTGTTTAGCCGAAGAGAGTAGATGCATATGGAGAAACGGAAAACTCGTCCAAGAAATGAGTTTACGGTTGAAAAATGTTAAGTCTGGTGAAATATTCGTCGAAATTGAATGGATGGATGTTACAGATTCCAAAGGCTTATCCGAGTTTGAGTTATAG 525 0.419 MDNILGLIRIRIKRGSNLIARDSRTSDPYVVVTMAQQTLKTAVVKDNCHPEWNEELTLYIQDKDLKTNTPIQLTVCDKDTFSVDDKMGEADIDIKPYLQCVKMGLTDLPEGHVVKMVQPDRTNCLAEESRCIWRNGKLVQEMSLRLKNVKSGEIFVEIEWMDVTDSKGLSEFEL 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g03798 174 Gene3D C2 domain 5 110 IPR035892 -
Vivi5g03798 174 PANTHER PROTEIN C2-DOMAIN ABA-RELATED 4 3 167 IPR044562 -
Vivi5g03798 174 SMART C2_3c 7 106 IPR000008 -
Vivi5g03798 174 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 2 162 IPR035892 -
Vivi5g03798 174 Pfam C2 domain 7 96 IPR000008 -
Vivi5g03798 174 ProSiteProfiles C2 domain profile. 1 107 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g03798 Vivi-Chr5 131974887 131975960 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g03798 39 170 C2H2 Transcription Factor Family AT1G70790 54.478 7.41e-45 143
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g03798 5 131974887 131975960 Vivi5g03798 5 131974887 131975960 ECH
Vivi5g03798 5 131974887 131975960 Vivi4g00356 4 7913352 7914809 ECH
Vivi5g03798 5 131974887 131975960 Vivi3g04077 3 71087739 71089568 ECH