Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g03762 ATGGGACAGAATCAAAGATCTCTGATCTACGCGTTCGTTTCTCGAGGAAGCGTTCTTCTCTCCGAGTACACCGAATTCAGCGGAAATTTCAATTCCATCGCGTTTCAGTGCCTTCAGAAGCTTCCAGCTTCTAACAACAAATTCACCTACAACTGTGATGGCCACACCTTCAATTACCTCGTCGATAATGGATACACTTATTGTGTTGTTGCGGATGAATCGGTTGGAAGACAAGTGCCTGTGGCTTTTCTGGAGCGTGTGAAGGATGATTTTGTTGCGAAATATGGTGGTGGGAAGGCTTCTACAGCTGCACCTAACAGTCTTAATAAGGAATTTGGGCCTAAGTTGAAGGAACATATGCAGTACTGTGTTGATCATCCTGAGGAGGTGAGCAAGCTTGCTAAGGTGAAAGCTCAGGTTTCTGAAGTCAAAGGTGTCATGATGGAGAATATTGAAAAGGTTCTGGACAGGGGGGAAAAGATAGAGCTTTTGGTTGACAAGACTGAGAACCTTCATCACCAGGCACAAGACTTCAGGAACTCAGGGACCAAAATCCGCAGAAAAATGTGGCTTCAAAATATGAAGATAAAGCTGATTGTACTGGCAATTTTGATAGCCTTGATCCTCGTAATTGTCCTCCCAATCGTTCTTCGGAATAAATAA 663 0.4374 MGQNQRSLIYAFVSRGSVLLSEYTEFSGNFNSIAFQCLQKLPASNNKFTYNCDGHTFNYLVDNGYTYCVVADESVGRQVPVAFLERVKDDFVAKYGGGKASTAAPNSLNKEFGPKLKEHMQYCVDHPEEVSKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHHQAQDFRNSGTKIRRKMWLQNMKIKLIVLAILIALILVIVLPIVLRNK 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g03762 220 SMART Longin_2 33 115 IPR010908 -
Vivi5g03762 220 Gene3D - 130 215 - -
Vivi5g03762 220 PRINTS Synaptobrevin signature 193 212 IPR001388 GO:0016020|GO:0016192
Vivi5g03762 220 PRINTS Synaptobrevin signature 157 176 IPR001388 GO:0016020|GO:0016192
Vivi5g03762 220 PRINTS Synaptobrevin signature 137 156 IPR001388 GO:0016020|GO:0016192
Vivi5g03762 220 FunFam Vesicle-associated membrane protein 722 1 129 - -
Vivi5g03762 220 FunFam Vesicle-associated membrane protein 726 130 216 - -
Vivi5g03762 220 Pfam Regulated-SNARE-like domain 36 113 IPR010908 -
Vivi5g03762 220 ProSitePatterns Synaptobrevin signature. 150 169 IPR001388 GO:0016020|GO:0016192
Vivi5g03762 220 Pfam Synaptobrevin 131 216 IPR042855 -
Vivi5g03762 220 PANTHER SNARE PROTEINS 5 214 - -
Vivi5g03762 220 CDD R-SNARE 132 190 - -
Vivi5g03762 220 Gene3D Longin domain 2 129 - -
Vivi5g03762 220 ProSiteProfiles v-SNARE coiled-coil homology domain profile. 132 192 IPR042855 -
Vivi5g03762 220 SUPERFAMILY SNARE-like 8 123 IPR011012 -
Vivi5g03762 220 ProSiteProfiles Longin domain profile. 12 116 IPR010908 -
Vivi5g03762 220 CDD Longin 9 123 IPR010908 -
Vivi5g03762 220 SUPERFAMILY SNARE fusion complex 127 194 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g03762 Vivi-Chr5 131534738 131539738 Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g03762 5 131534738 131539738 Vivi5g03762 5 131534738 131539738 ECH