Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g03592 ATGCTTGAAGATCCTCCTAAGACTCCCTCAGCCGAAACGGAGAATTCATTACCGAAAGCTTCTACAAACGGAGAACAAAGTGAGACTAGTGTTTCTGAAGATAAAACCCTGAAGAAACCCGACAAAATAATTCCATGTCCGCGATGCAATAGCATGGACACCAAGTTCTGTTATTTCAACAATTACAATGTCAACCAGCCCCGTCATTTTTGCAAGAAATGTCAAAGATACTGGACTGCAGGAGGTACAATGAGAAACGTTCCTGTTGGTGCAGGGCGCCGCAAGAACAAGACCTCACCTACCGCGCATTATAGACACTTGATGATTCCTGAAGGAGTTAAGCTTAATTCACCTAATGGATTACATGGTTCTGTCTTGGCATTCGATTCAGATTCGCCTCTTTGTAATACCATGACTTCTGTGTTGAAAATTGGCGAGAGGGCACCAAATTGTGTACCAAATGGTTTTCATCACGCAACTGGACCTAATACTTTTGTTTCCTATAGCGGAGAAGATGATCACTCGGTTGGAGTTTCGGTTACAACTTCAACTTCATCCGAGAGGAAAAGTCACACTGACACAAATGGATCGATGGAGAAAAGAGTTGAAGGTTTCCCTCCTCAATTGCAATATATTCCAAGTCCCCTTTTGCCTTATCCTTGGAACTCTGCAATGCCTCCTCCTACATTTTGTCCACCAAACTATCCATTAGCATTCTATCCTCCACCGGCGTATTGGGGTTGTGTGCCACCTCCATGGAGCATACCATGTATCTCACCAAATAGTCCTTCTGTTAACCAAAGTGACTCTCCCCAATATTCACCTACTTTGGGAAAACACTCGAGGGACGGAAACATCATTACCTCGGTAAACTCACCTAACGAAAAGTCTGATAAAGAACACAACAGTACCGAAAGCAGCGTTTTGATCCCAAAAACACTAAGATTCGATGATCCAAACGAAGCCGCAAAGAGTTCCTTATGGTCAAAGCTCGGGATCAGTAACGACAAAACCAACTCTCTCAATGGAGGAAGCATGTTCAATGCATTTCAATCCAAGGGAAAAGACAACAATCACTCGGCTGAAGCGTCGCCGCTGATGTACGCCAACCCTGCAGCTTTATCGCGGTCTCGTACCTTCCACGAGGGAACCTAA 1155 0.4442 MLEDPPKTPSAETENSLPKASTNGEQSETSVSEDKTLKKPDKIIPCPRCNSMDTKFCYFNNYNVNQPRHFCKKCQRYWTAGGTMRNVPVGAGRRKNKTSPTAHYRHLMIPEGVKLNSPNGLHGSVLAFDSDSPLCNTMTSVLKIGERAPNCVPNGFHHATGPNTFVSYSGEDDHSVGVSVTTSTSSERKSHTDTNGSMEKRVEGFPPQLQYIPSPLLPYPWNSAMPPPTFCPPNYPLAFYPPPAYWGCVPPPWSIPCISPNSPSVNQSDSPQYSPTLGKHSRDGNIITSVNSPNEKSDKEHNSTESSVLIPKTLRFDDPNEAAKSSLWSKLGISNDKTNSLNGGSMFNAFQSKGKDNNHSAEASPLMYANPAALSRSRTFHEGT 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g03592 384 MobiDBLite consensus disorder prediction 176 201 - -
Vivi5g03592 384 MobiDBLite consensus disorder prediction 262 293 - -
Vivi5g03592 384 MobiDBLite consensus disorder prediction 1 36 - -
Vivi5g03592 384 Pfam Dof domain, zinc finger 42 98 IPR003851 GO:0003677|GO:0006355
Vivi5g03592 384 MobiDBLite consensus disorder prediction 9 30 - -
Vivi5g03592 384 MobiDBLite consensus disorder prediction 176 191 - -
Vivi5g03592 384 ProSitePatterns Zinc finger Dof-type signature. 46 82 IPR003851 GO:0003677|GO:0006355
Vivi5g03592 384 MobiDBLite consensus disorder prediction 262 307 - -
Vivi5g03592 384 PANTHER CYCLIC DOF FACTOR 2 11 383 IPR045174 GO:0003700|GO:0006355
Vivi5g03592 384 ProSiteProfiles Zinc finger Dof-type profile. 44 98 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g03592 Vivi-Chr5 128837045 128839786 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g03592 25 382 C2C2-Dof Transcription Factor Family AT3G47500 45.789 1.15e-83 260
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Vivi5g03592 zf-Dof 8.1e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g03592 - - gmx:100813315 471.47