Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g03591 ATGTCAGAGGTTAAAGACCCTGCCATAAAGCTATTTGGAAGGACGATTCCGCTTCCACTCATCATATCTAATGACTCTTCATCTTCCTCTCCTTCTTCTTCTCCACCAGAATTCATCTCTGCTATACAACATGAGGAACCATCAAGGAAAGAACTCATAACAGCACAAGATGAAGATGCCTCGCCACAAACCGCGGAGGATTTAAAATCTCTCGCAGCATGTTCACCCATGCTTGAAGATCCTCCTAAGACTCCCTCAGCCGAAACGGAGAATTCATTACCGAAAGCTTCTACAAACGGAGAACAAAGTGAGACTAGTGTTTCTGAAGATAAAACCCTGAAGAAACCCGACAAAATAATTCCATGTCCGCGATGCAATAGCATGGACACCAAGTTCTGTTATTTCAACAATTACAATGTCAACCAGCCCCGTCATTTTTGCAAGAAATGTCAAAGATACTGGACTGCAGGAGGTACAATGAGAAACGTTCCTGTTGGTGCAGGGCGCCGCAAGAACAAGACCTCACCTACCGCGCATTATAGACACTTGATGATTCCTGAAGGAGTTAAGCTTAATTCACCTAATGGATTACATGGTTCTGTCTTGGCATTCGATTCAGATTCGCCTCTTTGTAATACCATGACTTCTGTGTTGAAAATTGGCGAGAGGGCACCAAATTGTGTACCAAATGGTTTTCATCACGCAACTGGACCTAATACTTTTGTTTCCTATAGCGGAGAAGATGATCACTCGGTTGGAGTTTCGGTTACAACTTCAACTTCATCCGAGAGGAAAAGTCACACTGACACAAATGGATCGATGGAGAAAAGAGTTGAAGGTTTCCCTCCTCAATTGCAATATATTCCAAGTCCCCTTTTGCCTTATCCTTGGAACTCTGCAATGCCTCCTCCTACATTTTGTCCACCAAACTATCCATTAGCATTCTATCCTCCACCGGCGTATTGGGGTTGTGTGCCACCTCCATGGAGCATACCATGTATCTCACCAAATAGTCCTTCTGTTAACCAAAGTGACTCTCCCCAATATTCACCTACTTTGGGAAAACACTCGAGGGACGGAAACATCATTACCTCGGTAAACTCACCTAACGAAAAGTCTGATAAAGAACACAACAGTACCGAAAGCAGCGTTTTGATCCCAAAAACACTAAGATTCGATGATCCAAACGAAGCCGCAAAGAGTTCCTTATGGTCAAAGCTCGGGATCAGTAACGACAAAACCAACTCTCTCAATGGAGGAAGCATGTTCAATGCATTTCAATCCAAGGGAAAAGACAACAATCACTCGGCTGAAGCGTCGCCGCTGATGTACGCCAACCCTGCAGCTTTATCGCGGTCTCGTACCTTCCACGAGGGAACCTAA 1383 0.444 MSEVKDPAIKLFGRTIPLPLIISNDSSSSSPSSSPPEFISAIQHEEPSRKELITAQDEDASPQTAEDLKSLAACSPMLEDPPKTPSAETENSLPKASTNGEQSETSVSEDKTLKKPDKIIPCPRCNSMDTKFCYFNNYNVNQPRHFCKKCQRYWTAGGTMRNVPVGAGRRKNKTSPTAHYRHLMIPEGVKLNSPNGLHGSVLAFDSDSPLCNTMTSVLKIGERAPNCVPNGFHHATGPNTFVSYSGEDDHSVGVSVTTSTSSERKSHTDTNGSMEKRVEGFPPQLQYIPSPLLPYPWNSAMPPPTFCPPNYPLAFYPPPAYWGCVPPPWSIPCISPNSPSVNQSDSPQYSPTLGKHSRDGNIITSVNSPNEKSDKEHNSTESSVLIPKTLRFDDPNEAAKSSLWSKLGISNDKTNSLNGGSMFNAFQSKGKDNNHSAEASPLMYANPAALSRSRTFHEGT 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g03591 460 MobiDBLite consensus disorder prediction 85 106 - -
Vivi5g03591 460 MobiDBLite consensus disorder prediction 252 267 - -
Vivi5g03591 460 MobiDBLite consensus disorder prediction 252 277 - -
Vivi5g03591 460 Pfam Dof domain, zinc finger 118 174 IPR003851 GO:0003677|GO:0006355
Vivi5g03591 460 MobiDBLite consensus disorder prediction 338 383 - -
Vivi5g03591 460 MobiDBLite consensus disorder prediction 20 112 - -
Vivi5g03591 460 MobiDBLite consensus disorder prediction 20 39 - -
Vivi5g03591 460 ProSitePatterns Zinc finger Dof-type signature. 122 158 IPR003851 GO:0003677|GO:0006355
Vivi5g03591 460 ProSiteProfiles Zinc finger Dof-type profile. 120 174 IPR003851 GO:0003677|GO:0006355
Vivi5g03591 460 PANTHER CYCLIC DOF FACTOR 2 1 459 IPR045174 GO:0003700|GO:0006355
Vivi5g03591 460 MobiDBLite consensus disorder prediction 338 369 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g03591 Vivi-Chr5 128836572 128839786 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g03591 1 458 C2C2-Dof Transcription Factor Family AT3G47500 41.031 2.46e-90 280
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Vivi5g03591 zf-Dof 1.1e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g03591 - - gmx:100813315 528.865
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g03591 5 128836572 128839786 Vivi5g03591 5 128836572 128839786 ECH