Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g02590 ATGGTTTTCTCTTCTATTCAAGGTTATGTAGATCCACCTAATTGGCACCACCAGCAACCAAATCATCATCATCAACAAAATGGAAGTGATAACACTCAACTACTTCCACCTTTACCTCCTCAAGTGGGAGGTAATACTGGCGCGGCGGGTGGTGCCATGGGCTCGATCAGACCAGGCTCAATGGCTGATCGAGCTCGTTTAGCAAAAATACCACCACCAGAACCCGCGCTAAAGTGTCCTCGTTGCGATTCAACCAACACTAAATTTTGCTACTTCAATAACTACAGTCTCACTCAACCTCGCCACTTCTGTAAGACATGTAGGCGTTATTGGACAAGAGGGGGTGCACTTAGAAATGTTCCGGTTGGTGGAGGGTGTCGTAGAAACAACAAAAAGAACAAAAGAAACCGTTCGAAATCTCCTACTCCAACAAACTCTCATGAGAAACAAACTTCCTCATCAAGTGCAATCCCTTCTCATCCTGAACTAATCGGTCATCAGCTACCGCAACAAATAAGCAACTTACCCTTTATGGCCTCTATGCAGAATCATCTCAGTCGTTATGTTGTCGGAAACGTTAACATGGGTCTCGGTAACTCAGATCATATGGGGTTTCAAGTTGGTGCTGGTAATGGTAACTGTAACTCAGCTTCTGCTTCAGCTACGGTAGGTGGTGGTGGAGTTGAACAGTGGCGTAACTTGCAGCAATTTCCCTTCATGAATACTTTCGAATCAAATTCCGGTGGAAACAATTCATACCATTTTCAAGGAGAAACTATAGAAGCTGCAGCAGCAACTGGATTTGTTGGAGATCATATAGCTTCAAACTCTAGGGCTGTTGTTAATCAAGAGCCACCAGTTAAAAGAGAAGAAAACCGTGGTTTAAATTTATCAAGAACTTCTCTCGGTGTCTCCGAACAAAATAACCAACAACAATACTATTCATGGAATGATTTATCAGGTTCTTCAACTACTCATCTCTTATAA 987 0.4286 MVFSSIQGYVDPPNWHHQQPNHHHQQNGSDNTQLLPPLPPQVGGNTGAAGGAMGSIRPGSMADRARLAKIPPPEPALKCPRCDSTNTKFCYFNNYSLTQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNNKKNKRNRSKSPTPTNSHEKQTSSSSAIPSHPELIGHQLPQQISNLPFMASMQNHLSRYVVGNVNMGLGNSDHMGFQVGAGNGNCNSASASATVGGGGVEQWRNLQQFPFMNTFESNSGGNNSYHFQGETIEAAAATGFVGDHIASNSRAVVNQEPPVKREENRGLNLSRTSLGVSEQNNQQQYYSWNDLSGSSTTHLL 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g02590 328 MobiDBLite consensus disorder prediction 139 161 - -
Vivi5g02590 328 ProSitePatterns Zinc finger Dof-type signature. 79 115 IPR003851 GO:0003677|GO:0006355
Vivi5g02590 328 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 49 246 IPR045174 GO:0003700|GO:0006355
Vivi5g02590 328 MobiDBLite consensus disorder prediction 11 58 - -
Vivi5g02590 328 MobiDBLite consensus disorder prediction 11 39 - -
Vivi5g02590 328 MobiDBLite consensus disorder prediction 118 161 - -
Vivi5g02590 328 MobiDBLite consensus disorder prediction 280 303 - -
Vivi5g02590 328 Pfam Dof domain, zinc finger 76 131 IPR003851 GO:0003677|GO:0006355
Vivi5g02590 328 ProSiteProfiles Zinc finger Dof-type profile. 77 131 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g02590 Vivi-Chr5 108945335 108947014 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g02590 1 131 C2C2-Dof Transcription Factor Family AT2G37590 62.238 8.72e-48 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Vivi5g02590 zf-Dof 1.1e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g02590 - - gmx:100816635 334.339