Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g02503 ATGGATTCTTCTAGTGAACAACATCAGCAAATGTCTAACCAGTCATTGGAGAGCATGTTAACATGTTCAAAAGGAGAGCAAGACAAAAAGGCAAAACCTCAACCAGAGGCACTAAAATGTCCGAGATGTGACTCGAGCAACACCAAGTTTTGTTACTACAACAATTACAGTCTTTCGCAACCGAGATATTTCTGCAAGTCGTGTAGGAGATATTGGACTAAAGGAGGTACGTTAAGAAATGTTCCTGTTGGTGGGGGGTGTAGAAAGAACAAAAGATCATCGTCGTCGGCGTCGAGAAGAATTCAAGATCAGGCATTTGTAAACATTCCGGATGCGGTTAATTGTTTCCCTTCGTTGGGTTATGATTCCAATGATCTTACTCTTGCCTTAGCTAGGCTTCATAAGGGTCAGCTTGGATTTGATCATGAACATGATTTTTCCATTTTAGGAAACCAGGCCAACTCAAACATAAACACAAACACCTCATGTGCTGTTCTTAACAATCATGGTATGAGCCATTCCTCGAACAATCATAATTTCTTTGAAGCGTTCATGGGGTCTCAGAACAATGTGTACTATGGATATGGGAATAGGGACATGGGGGAAGTGGATAATAGCAATGGCAATGTTAGTGGTGAGATGATGTTGCCTTATGATCATGAAATGAGCATTGCAACAACTCAAGCAGTGACAGTCACTACCATGAAACAAGAAATTTGTAATGTTAGGGAACAAAATGAAAATAGGGTTTTGTTAGGTTTTCCATGGCAGTTCAATAATGGAGATTCTAACATGGCTGAAATTGATCACTCAGGAAGAGCTGGTTGGAATGGACTCACTTCACCTTGGCATGGCCTTCTTAACAGCCCCCTAATGTAG 879 0.4096 MDSSSEQHQQMSNQSLESMLTCSKGEQDKKAKPQPEALKCPRCDSSNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPVGGGCRKNKRSSSSASRRIQDQAFVNIPDAVNCFPSLGYDSNDLTLALARLHKGQLGFDHEHDFSILGNQANSNINTNTSCAVLNNHGMSHSSNNHNFFEAFMGSQNNVYYGYGNRDMGEVDNSNGNVSGEMMLPYDHEMSIATTQAVTVTTMKQEICNVREQNENRVLLGFPWQFNNGDSNMAEIDHSGRAGWNGLTSPWHGLLNSPLM 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g02503 292 ProSitePatterns Zinc finger Dof-type signature. 40 76 IPR003851 GO:0003677|GO:0006355
Vivi5g02503 292 MobiDBLite consensus disorder prediction 1 22 - -
Vivi5g02503 292 MobiDBLite consensus disorder prediction 1 38 - -
Vivi5g02503 292 MobiDBLite consensus disorder prediction 23 37 - -
Vivi5g02503 292 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 14 198 IPR045174 GO:0003700|GO:0006355
Vivi5g02503 292 Pfam Dof domain, zinc finger 37 92 IPR003851 GO:0003677|GO:0006355
Vivi5g02503 292 ProSiteProfiles Zinc finger Dof-type profile. 38 92 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g02503 Vivi-Chr5 106234474 106236137 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g02503 6 292 C2C2-Dof Transcription Factor Family AT2G28510 38.973 1.02e-50 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Vivi5g02503 zf-Dof 9e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g02503 - - gmx:100799737 382.874