Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g01256 ATGGTTTTTACTTCAATACCAGCAGCTTATCTTGATGCAGCCAACTGGCAGCAGCAGCAGCAGCAACAGAATCATCATCATCATCAACAACAACCAGAAAACGGCGGTTCCGGTTCCGGTTCGGTCTCTCAACAACTTTTTCAGACACCACCACCACAAGCATCACAAACACAGCCTCATGGAGCTGGTAGCGCCGGCGCAATTAGGCCGGGATCGATGTCCGACAAAGCAAGAATGGCGAACATGCCTATGCCGGAGACGGCGCTGAAATGTCCGCGCTGCGAATCAACCAACACGAAGTTTTGCTACTTCAACAACTACAGCCTCTCTCAGCCACGACACTTCTGCAAGACTTGCAGAAGGTACTGGACGAGAGGGGGCGCTTTAAGGAACGTCCCGGTTGGGGGAGGCTTCCGGAGAAACAAAAGAAGCAAAGGAAGTAACTCGGCCAAATCTCCGGCGAGCTCCGATCTTCAAACCGGTAGTGCTAGTTCAACAAACTCAATCACATCTCATAACAACCACTCATCCGCCTCGGGCGATATATTAGGCCTTACACCTCAAATGTCATCATTGAGATTCATGACACCATTACACCATAATTTCAATAACCCTAATGAATTCGGAGGCGGCGATCTAGGGTTAAACTATGGATTTAGCTACATGGGAGGAGGAGGAGGTGGAGGTGATCTAGGAAGTTCTTTACTTGGTGGAAATGGTAACTCAATTTTATCTTCAACAAATGGTTTGGAACAATGGAAGATGCCTATGCCTATGGCTATGTCTATGCCTATGCCTATGCATATGTCTATGCCAATGACTCATCATCAACAACATCAATTTCCATTTTTGACCAACTTAGAAACTTCAAATGGAAACTTATACCCTTTTGAAGGAAATGTTCAAAACCATGAGATGATGATATCAAATAGTGCATACATGAGGCCAAAGGTAACTTCAACTTCTGGAATTATGACTCAACTAGCTTCTGTGAAGATGGAAGATAGTATCAATAGAGGCTTCTTGGGAATCACCAGCAACAATAATAACAATAATAATAACAACAATCAAGGAAGTGAACAATATTGGAATAGTGCTGTTATTACTGGCAATTCTGTAGCTAATTGGAATGATCATGTTTCTGGTTTTAGTTCTTCTTCAAATACTACTAGTAATAACCAGATGTAG 1188 0.4343 MVFTSIPAAYLDAANWQQQQQQQNHHHHQQQPENGGSGSGSVSQQLFQTPPPQASQTQPHGAGSAGAIRPGSMSDKARMANMPMPETALKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRNVPVGGGFRRNKRSKGSNSAKSPASSDLQTGSASSTNSITSHNNHSSASGDILGLTPQMSSLRFMTPLHHNFNNPNEFGGGDLGLNYGFSYMGGGGGGGDLGSSLLGGNGNSILSSTNGLEQWKMPMPMAMSMPMPMHMSMPMTHHQQHQFPFLTNLETSNGNLYPFEGNVQNHEMMISNSAYMRPKVTSTSGIMTQLASVKMEDSINRGFLGITSNNNNNNNNNNQGSEQYWNSAVITGNSVANWNDHVSGFSSSSNTTSNNQM 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g01256 395 MobiDBLite consensus disorder prediction 130 182 - -
Vivi5g01256 395 ProSitePatterns Zinc finger Dof-type signature. 91 127 IPR003851 GO:0003677|GO:0006355
Vivi5g01256 395 MobiDBLite consensus disorder prediction 147 182 - -
Vivi5g01256 395 MobiDBLite consensus disorder prediction 16 78 - -
Vivi5g01256 395 MobiDBLite consensus disorder prediction 16 62 - -
Vivi5g01256 395 ProSiteProfiles Zinc finger Dof-type profile. 89 143 IPR003851 GO:0003677|GO:0006355
Vivi5g01256 395 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 34 299 IPR045174 GO:0003700|GO:0006355
Vivi5g01256 395 Pfam Dof domain, zinc finger 88 143 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g01256 Vivi-Chr5 33176955 33178850 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g01256 1 254 C2C2-Dof Transcription Factor Family AT2G37590 43.939 4.84e-52 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Vivi5g01256 zf-Dof 4.9e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g01256 - - vvo:131606482 644.039