Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g05947 ATGGTTATCACTACTAAATCTTCCTCTAATAACCACCCTCCGATAATCGCGCCGTCATCGTCGGCGGCGGCGGCGGATGATGCTAACGTCCCTAATTTCACGCCGAAAGCCCTTCCGTCGCCCTGGGCTCAGGTTGTTCGCGGCGGCGAGGTGGAATCGCCTACCGGCATTCATCAGTCACTGCCGTCTTCTTCGTCGTCTTCGTCATCGTCTCTGACTACAGCTACTGGCGCCGCCGATCAAGTGCCGTTGTCTGATCATTCATCAAAGGAGATTTCTACTCCGCAGCCGTTGAAGGAGGTGGCTGCTCCGGAGCTGACGGTGGCGGAGAACTCTGGTAAGACTGTAGATACCGGAGAGGGGAGTGATGGCAATGCAGGTCGTTCTAAGAAGCCTGCATGGAACAAACCCTCTAATGGAGTGGTCATGGAGACTGGTCCTGTCATGGGTGCTGAATCCTGGCCTGCTTTGTCTGAATCCACCAAAGTTTCTGCAAAATCCATAGCTGAATCGGCCTCCAAAGTTGCTGTTGCTGTTGCTGATGGATCAACTTCCACTTCTCAGGGGCCTGTAATTTCACAACCTCCTCAGAGACATGGTACCAGTAACCCTAGATCTGGTTCGGCAACTAACAATAATCTGCCCAATAGACCAAGACCTATTAGGCCGGTAGGTGACATCAACATTGGGCCTGGTCCTGCTCACGCTCGGAGTAGCTTATCCAACCCTCCTACTCCTCCACCACTGCCTCCCTTTCCTGTATATCAGCTCCCTCCAGCTAACTTTCGGAATATGGGGCCAACTATCCCTGTCTCTTCTCCAAGAGATCATCACCGGAACAATACCTGGGATGCAAGACCTTTGGTTGGGGGTTCCTCTCGCAGGGGTAATTTTGGGTCCCGTCCACGAGGAGATGGTTCCTATCATCATAATTACAGTAGTAGGCGCGATCAAGATCGAGGAAATTATGTGAATACTAGAGATGGTCATGTATCCCAACCAAGGATGCCTCCCAGAGGAATACTGAGGCACCCACCACCACCACCACCACCTAATACTGCTGCATTTTTGGGTCCTCAGCCCATTGCACCCTTTCCAAACCCTGTTGCTTATCCTGATGTGTATTACTTTCCACCAGTCCCGTTGGATCCCTTTAGGGGTATGCCGTTCTTTCCCCCTAGCCCTCCTCCTACAACAGTATACGCTGCTGCAGAATCTTCTTTCTCCAATGTGATAGTTAACCAGATTGATTATTACTTTAGTGATACTAATCTGGTGAAAGATGAGTTTTTAAAGCAAAATATGGATGAAGAGGGTTGGGTTCCAATTACCGTGATAGCAAACTTCCCTCGGGTTAAAAGTTTGACAAGCAACGTTCAGTTGCTTCTGGATTCAATGAAAAATTCAACTGTTGTGGACGTCAAGGGTGACAAATTGAGAAGACGTTATGACTGGATGAAATGGTTGTCCTCTTCTCAGGTTAAAGTTGATTCTGGTTCAGTTTCACCTAGTGAATCGAGCTACAATAACCTCGCTGCTGATTTGCAAACAATCAATCTGGAGGAAACAACAACTGAAGCTGAAGGTGAGTCCCAACACTCTAATGGTGGTGATGATGCTGGGAACCCCAGTTAA 1635 0.4899 MVITTKSSSNNHPPIIAPSSSAAAADDANVPNFTPKALPSPWAQVVRGGEVESPTGIHQSLPSSSSSSSSSLTTATGAADQVPLSDHSSKEISTPQPLKEVAAPELTVAENSGKTVDTGEGSDGNAGRSKKPAWNKPSNGVVMETGPVMGAESWPALSESTKVSAKSIAESASKVAVAVADGSTSTSQGPVISQPPQRHGTSNPRSGSATNNNLPNRPRPIRPVGDINIGPGPAHARSSLSNPPTPPPLPPFPVYQLPPANFRNMGPTIPVSSPRDHHRNNTWDARPLVGGSSRRGNFGSRPRGDGSYHHNYSSRRDQDRGNYVNTRDGHVSQPRMPPRGILRHPPPPPPPNTAAFLGPQPIAPFPNPVAYPDVYYFPPVPLDPFRGMPFFPPSPPPTTVYAAAESSFSNVIVNQIDYYFSDTNLVKDEFLKQNMDEEGWVPITVIANFPRVKSLTSNVQLLLDSMKNSTVVDVKGDKLRRRYDWMKWLSSSQVKVDSGSVSPSESSYNNLAADLQTINLEETTTEAEGESQHSNGGDDAGNPS 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g05947 544 MobiDBLite consensus disorder prediction 514 544 - -
Vivi4g05947 544 Pfam La domain 412 467 IPR006630 -
Vivi4g05947 544 SMART la 406 482 IPR006630 -
Vivi4g05947 544 SUPERFAMILY "Winged helix" DNA-binding domain 402 489 IPR036390 -
Vivi4g05947 544 CDD LAM 412 482 - -
Vivi4g05947 544 MobiDBLite consensus disorder prediction 1 17 - -
Vivi4g05947 544 ProSiteProfiles La-type HTH domain profile. 402 491 IPR006630 -
Vivi4g05947 544 MobiDBLite consensus disorder prediction 1 359 - -
Vivi4g05947 544 MobiDBLite consensus disorder prediction 178 217 - -
Vivi4g05947 544 MobiDBLite consensus disorder prediction 308 324 - -
Vivi4g05947 544 PANTHER LUPUS LA PROTEIN-RELATED 151 495 IPR045180 -
Vivi4g05947 544 MobiDBLite consensus disorder prediction 56 95 - -
Vivi4g05947 544 MobiDBLite consensus disorder prediction 339 359 - -
Vivi4g05947 544 Gene3D - 400 492 IPR036388 -
Vivi4g05947 544 MobiDBLite consensus disorder prediction 240 257 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g05947 Vivi-Chr4 196596622 196601655 Dispersed/Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi4g05947 4 196596622 196601655 Vivi4g05947 4 196596622 196601655 ECH
Vivi4g05947 4 196596622 196601655 Vivi4g05947 4 196596622 196601655 PCT