Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g05890 ATGGTTTCCTTAGAAGAAAAGGTTAAAACTGTTGGTGGTGGAGTTGGAGGTGGACTTGTTGCTGAAATGAAATTGCTTAAGGAAATGCAGGAACATTGTGGGGTGAGGAAGAGTTTGAATTCTGAGTTATGGCATGCTTGTGCTGGTCCTCTTGTGACTTTACCTCATGTTGGAGGTCTTGTTTATTACTTTCCTCAAGGACATAGTGAACAGGTTGCAGCTTCTACTAGAAGAACTGCAACTTCACAGATTCCAAACTATCCTAATCTTCCTTCTCAGTTGTTGTGTCAAGTTCAAAATGTCACACTTCATGCTGATAAGGAAACAGATGAAATCTATGCTCAAATGACTCTTCAACCATTGAATTCTGAAAAAGAAGTGTTTCCAATATCTGAGTTTGGATTGAACCAAAGTAAACATCCAACTGAGTTTTTCTGCAAAACTTTGACTGCTAGTGATACTAGCACACATGGTGGTTTTTCGGTTCCGCGCAGAGCTGCTGAGAAGCTATTTCCTCCATTGGATTACACAATTCAACCTCCAACTCAAGAACTTGTTGTTCGAGATTTGCATGATAATACATGGACGTTTCGACATATATACCGAGGTCAGCCGAAGAGACACCTTCTCACGACAGGATGGAGTTTGTTTGTCGGCTCAAAAAGGCTTAGAGCGGGTGATTCAGTTTTATTTATAAGGGATGAGAAATCACAATTGCGAGTTGGTGTAAGGCGCGCGAATCGTCAACAGACAACAACATTGCCATCATCGGTACTTTCTGCTGATAGCATGCACATTGGCGTCCTTGCTGCTGCAGCTCATGCTGCTGCTAATCGAAGTCCGTTCTCAATTTTCTACAATCCGAGGGCTTGTCCTTCGGATTTTGTTATTCCACTGGCGAAATACCGAAAAGCTGTTTACGGGACTCAGCTCTCGGTTGGTATGAGATTTGGTATGATGTTTGAGACCGAGGAATCGGGTAAGCGCAGATATATGGGAACGATTGTTGGTATCAGTGATGTCGATCCACTAAGGTGGCCTGGTTCTAAGTGGCGAAATATTCAAGCCGAATGGGACGAGCCAGGGTGCGGTGATAAGCAAAATAGAGTTAATGTATGGGAGATCGAGACTCCTGAAAGCCTTTTTATCTTTCCATCTATGACTTCGAGTCTAAAACGGCCGTTACAACCCGGTTTTTCGGAAAATGAGTGGGGATCTTTGATAAGAAGACCTTTCATTAAAGCATCCGAAAATGGATCAATGGATCTCTCGAACACAATGTCAAATCTCTACCAAGAAAACATGATGAAGATGATGTATAAACCACAAGTTATCAACAACAATGGAACATTTTTACCTGTAATGCAACAATATGCTCCTACAAGAGTTCCTGTGCCAGATATGAAATCTTCGCATGCGATAGAGAATCCGAAAGTTCATCTTTCAACTACCGAGAGCATGCCTAATAATACCTTAAACATGCATTCCTTGTTGAGAAATGATCAACCTGACAAATTTCACCCTTTGACCACAACCGATAAGATGAAAATAGAATCCGAGTCGTTGCCTGATCAAATTTTTGACTTCCCTTCTTTCGAAGCCTGCAACAACATTGAAAAAGCGAATGCGACCAATCCTGTTAATCCTCAAAGCCTTGCAAACCAATCAACATATCATAATCAAAATCCATTATTATTCAATCAAACTAGTCCGTGGCCTATTCAGCAGCAGGCTCAGTTAGATTCGTCGATGTTGCATCCTCAACTGATTGATATGGTGCAGCCCGATTCTTCCATTGTAAACGGTATGCTTCCTCAGATAGACGTTGACGAATGGATGATGTATTCTTCTTGCCAACCTCAAGTAGTGAATCCGTCTATACCTTCCATGAACCAAGAAGTTTGGGATCATTATGTCAAGAACTTTAACATGAAGGATCTTTCAGACGAAAGCAATAGCCAAAGTGAAATTTGCGTCAATGTCGATGTTAGTAATAGTGTTAATACCACTATGGTTGATCCTTCTACTACTTCAAACACAATTTTCGACGATTTTTGCTCAATGAAAGATAAAGATTTTCAACATCCTCAAGACTGCATGGTCGGAAACTTAAGTTCTAGTCAAGATGGGCAATCTCAGATAACATCGGCAAGCCTAGCCGAGTCGCAAGCGTTTTCACTGCGAGACAACTCAGGTGGTACCTCTACAAGTCATGTTGATTTTGATGATAGTAGTTTTCTGCAGAACAACAACTCATGGAAGCAAGTAGCTGCACCAATCCGAACCTACACAAAGGTTCAAAAAGCAGGTTCGGTTGGAAGATCGATTGATGTAACTACATTCAAGAACTATGGAGAGCTGATTTGCGCAATTGAATGCATGTTTGGACTAGACGGTCTGCTGAATGACACGAAAGGTTCGGGATGGAAACTAGTATATGTAGATTATGAGAGTGATGTTCTACTTGTTGGAGACGATCCTTGGGAGGAATTTGTGGGGTGTGTTAGGTGTATAAGAATATTATCACCTACAGAAGTTCAACAGATGAGTGAAGAAGGGATGAAGCTTTTAAACAGTGGAGCATTGCAAGGAATCAATGTTTGA 2604 0.4128 MVSLEEKVKTVGGGVGGGLVAEMKLLKEMQEHCGVRKSLNSELWHACAGPLVTLPHVGGLVYYFPQGHSEQVAASTRRTATSQIPNYPNLPSQLLCQVQNVTLHADKETDEIYAQMTLQPLNSEKEVFPISEFGLNQSKHPTEFFCKTLTASDTSTHGGFSVPRRAAEKLFPPLDYTIQPPTQELVVRDLHDNTWTFRHIYRGQPKRHLLTTGWSLFVGSKRLRAGDSVLFIRDEKSQLRVGVRRANRQQTTTLPSSVLSADSMHIGVLAAAAHAAANRSPFSIFYNPRACPSDFVIPLAKYRKAVYGTQLSVGMRFGMMFETEESGKRRYMGTIVGISDVDPLRWPGSKWRNIQAEWDEPGCGDKQNRVNVWEIETPESLFIFPSMTSSLKRPLQPGFSENEWGSLIRRPFIKASENGSMDLSNTMSNLYQENMMKMMYKPQVINNNGTFLPVMQQYAPTRVPVPDMKSSHAIENPKVHLSTTESMPNNTLNMHSLLRNDQPDKFHPLTTTDKMKIESESLPDQIFDFPSFEACNNIEKANATNPVNPQSLANQSTYHNQNPLLFNQTSPWPIQQQAQLDSSMLHPQLIDMVQPDSSIVNGMLPQIDVDEWMMYSSCQPQVVNPSIPSMNQEVWDHYVKNFNMKDLSDESNSQSEICVNVDVSNSVNTTMVDPSTTSNTIFDDFCSMKDKDFQHPQDCMVGNLSSSQDGQSQITSASLAESQAFSLRDNSGGTSTSHVDFDDSSFLQNNNSWKQVAAPIRTYTKVQKAGSVGRSIDVTTFKNYGELICAIECMFGLDGLLNDTKGSGWKLVYVDYESDVLLVGDDPWEEFVGCVRCIRILSPTEVQQMSEEGMKLLNSGALQGINV 867
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g05890 867 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 36 851 IPR044835 GO:0003677|GO:0006355|GO:0009725
Vivi4g05890 867 Pfam AUX/IAA family 754 847 IPR033389 -
Vivi4g05890 867 SUPERFAMILY CAD & PB1 domains 762 840 - -
Vivi4g05890 867 SUPERFAMILY DNA-binding pseudobarrel domain 136 275 IPR015300 -
Vivi4g05890 867 Gene3D - 142 246 IPR015300 -
Vivi4g05890 867 Pfam B3 DNA binding domain 145 246 IPR003340 GO:0003677
Vivi4g05890 867 CDD B3_DNA 144 245 IPR003340 GO:0003677
Vivi4g05890 867 Gene3D - 310 382 - -
Vivi4g05890 867 ProSiteProfiles B3 DNA-binding domain profile. 145 247 IPR003340 GO:0003677
Vivi4g05890 867 ProSiteProfiles PB1 domain profile. 761 845 IPR000270 GO:0005515
Vivi4g05890 867 SMART B3_2 145 247 IPR003340 GO:0003677
Vivi4g05890 867 Pfam Auxin response factor 272 355 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Vivi4g05890 867 Gene3D - 757 850 - -
Vivi4g05890 867 FunFam Auxin response factor 756 850 - -
Vivi4g05890 867 FunFam Auxin response factor 143 247 - -
Vivi4g05890 867 FunFam Auxin response factor 310 382 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g05890 Vivi-Chr4 195655328 195660085 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Vivi4g05890 AUX_IAA 9.4e-10 CL0072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi4g05890 4 195655328 195660085 Vivi4g05890 4 195655328 195660085 ECH