Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g05861 ATGAAGATCCAATGCGACGTTTGCAACAAAAACGAAGCTTCATTATTCTGCACCGCCGATGAAGCCGCCTTATGCAACGACTGCGACCACCGTGTCCACCACGCCAACAAGCTTGCCTCCAAACACCACCGTCTCTCTCTTCACAGTCCTTCTCCTAAACAACACCCTCTCTGTGATATCTGCCAGGAGAGAAGAGCTTTTGTGATGTGTAAACAAGATAGAGCGATTCTGTGTAAAGACTGTGATTCAGCTATTCATTCTGTTAACGAACTTACGCAGAAACATGATAGGTTTCTTCTCACTGGTGTTAAGCTTTCGACTACTAGTACTAACTCTTCATCTTCATCAGTATCAACTACTACTACTAGTGTTAAGTCAAATCTTGTTCCTTCTTCTTTGATTGAAAAGTCAACCACTGTATCACAAACTTCAACTCTCAAAAACGTGGACATGGAAGAAGGAGAAGAAGAAGGAAGTGGTGGTTCAAGTATTTCTAAGTACTTGATTGAGACTCTACCTGGTTGGCAAGTTGATGATTTTCTAGATTCTTCTTCTGTTCCCTTTTCTTTCTCTAAGGGTGATGAACTGTTTGAAGAAAATCTTGATTCATTTTTTCCCAATAGTAATATTGGGATCTGGGTTCCTCAAGCTCCACCACCTTCTCTATATTCTTCTTCACAGATAATGACGATGGGGCAGAATGAGACCAAGAAAAACAGCAACAACAAAAGCAGCATCAACAGATCAAGGTTGAGGGATGATGGTAACATTTTCACAGTTCCACAGATTAGTCCTGCTTCCAGTTCCAAGAGGACAAGATATCTATGGTAG 831 0.4128 MKIQCDVCNKNEASLFCTADEAALCNDCDHRVHHANKLASKHHRLSLHSPSPKQHPLCDICQERRAFVMCKQDRAILCKDCDSAIHSVNELTQKHDRFLLTGVKLSTTSTNSSSSSVSTTTTSVKSNLVPSSLIEKSTTVSQTSTLKNVDMEEGEEEGSGGSSISKYLIETLPGWQVDDFLDSSSVPFSFSKGDELFEENLDSFFPNSNIGIWVPQAPPPSLYSSSQIMTMGQNETKKNSNNKSSINRSRLRDDGNIFTVPQISPASSSKRTRYLW 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g05861 276 ProSiteProfiles Zinc finger B-box type profile. 53 100 IPR000315 GO:0008270
Vivi4g05861 276 MobiDBLite consensus disorder prediction 260 276 - -
Vivi4g05861 276 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Vivi4g05861 276 MobiDBLite consensus disorder prediction 142 162 - -
Vivi4g05861 276 CDD Bbox1_BBX-like 5 47 - -
Vivi4g05861 276 CDD Bbox1_BBX-like 57 100 - -
Vivi4g05861 276 SMART bboxneu5 4 47 IPR000315 GO:0008270
Vivi4g05861 276 SMART bboxneu5 53 100 IPR000315 GO:0008270
Vivi4g05861 276 FunFam B-box zinc finger protein 21 1 98 - -
Vivi4g05861 276 Pfam B-box zinc finger 4 44 IPR000315 GO:0008270
Vivi4g05861 276 Pfam B-box zinc finger 54 96 IPR000315 GO:0008270
Vivi4g05861 276 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 268 - -
Vivi4g05861 276 Gene3D Classic Zinc Finger 1 97 - -
Vivi4g05861 276 MobiDBLite consensus disorder prediction 257 276 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g05861 Vivi-Chr4 195269058 195270698 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Vivi4g05861 zf-B_box 2.8e-05 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi4g05861 4 195269058 195270698 Vivi3g00541 3 9132465 9134083 PCT