Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g05850 ATGTATCCCAACCAAGCGTTTTCGTCGGGATCTTACGCCGAGATGATTTCCGGGAACACTTTGTTACCTCATAACTATAGTGAATCTGTGGGAGGACAAAATGAGTTGAAGTTTATCGCATCTATGGACGACTCGATGAATATGCAGTCTATTGATCAAGGGCATTCGAATGCTGCTACGAGTGATCCATCGTCACAATTCGGACTCGTTGAGAGCGAGCAAAATGTACAATGTCAAGGGTTGTCTCTTAGGCTTGGAACAATGATGCCTTCCTTTCAATATCAGTATCCCGGCAACGGTTTCACGTCGCTAATGAATGCTCAGATTTCAAATTTAAAAGGGTCCGGGTCTCTTAAAGACGACGATGATTTGAGAAATGCGGAGTGTATTGCGTATCATAATTCTGTCAAAAGGGAGGGTTTGTATAATCCGCACTCATCGATAGGTCTTAACGAAGGTCAATCTGATCCGTGTTTACATGGATCAGCAATTCTTCCGAACAATGGCCTTAACGGGCACTACCTTAAGGCGGCACAGGAATTGCTCGATGAAATAGTTAATGTTCGAAAGACGTTGAAACAAACTGGATTGGAGAACCAACAAAGTTTTCGTGATGCTGGTTTAGACGGTTCCAAAGATTCAGATGGAAAATCTACTAGCCAATCTATGCAAATGTCCTCGGGTCCTAATGGTTCTAATGCAAACAACTCTACGACCGAGCTATCACCAGCGGAACGACAGCATTTGTTAGACAAGAAAACAAAACTTTTGTCCATGCTGGATGAGGTCGACAAAAGATACCGACAATACTGTCATCAGATGCAGATTGTGGTATCGTCTTTCGACATGGTTGCTGGCTGTGGAGCAGCCGAACCATACACAGCTCTTGCTTTGCGCACAATTTCTCGTCACTTTCGCTGTTTGCGTGATGCTATAAGCGGCCAGATTCAAGTAACTCAGAGGAGCCTCGGTGAACAAGAGGGAATACCTCGTCTCCGGTATGTCGATCAGCAGCTTAGACAACAAAAAGCTCTTCAGCAGCTTGGTGTAATGAGACAAGCTTGGAGACCTCAGAGGGGACTTCCCGAAAGCTCTGTTTCAATACTCCGTGCATGGCTCTTCGAGCATTTCCTTCATCCTTATCCTAAGGACTCGGAGAAAATTATGCTGGCAAGACAAACAGGATTGACCCGAAACCAGGTGGCGAATTGGTTTATTAACGCGAGGGTGCGTCTATGGAAACCGATGGTCGAAGAAATGTACAAAGAAGAGTTTGGAGATTCCGAGACAAGCAGCAATCTTTTATCAGAAAACACACCGAAAGCTCCAAGAGACGAAGATCTTCGAGCGTGGGATGATAAAAGAGACGAGTCTCATGACAAGTTAATAACCATTGATAGCGTTCAACAACAAGGTCAAATTGCAGGGTTGAAGCTGGATCATGCGTCGTCTTCCGCCACCACCGCGACAGAATTGGAAAGAGGGATTCAAAGTAATGATCATTGGACAAATGTGATGGATTCTAGAATTGGGAAAATGCAGGGTGACCAACAAAGGTTTAACATGAACAATAGTCCTTATTCAAATGCACCTATCTCGATAAACCAGAATGGTGAAAACTGCATAATGGATTCTACTCCTACTACTTATGATGATTTATCGGAGTTGAGTAACTTTGCTGTTGGTGGACATGTCTCACTTGCGTTGGAGTTGAGGAACTCGGAAAGTGATGGATTTGGTTTGTCGAATGATGACGTCAGTAAAAGGCGTAATCAAACATTGGCTTCTTCGCCGGATAACGATTTGTTAGATTATCATTTCACAGACAATGGAAAGCAACAACACAAGTTTGGCAGTCCTCATTTATTACATGAGTTCGTTGTCTGA 1887 0.4372 MYPNQAFSSGSYAEMISGNTLLPHNYSESVGGQNELKFIASMDDSMNMQSIDQGHSNAATSDPSSQFGLVESEQNVQCQGLSLRLGTMMPSFQYQYPGNGFTSLMNAQISNLKGSGSLKDDDDLRNAECIAYHNSVKREGLYNPHSSIGLNEGQSDPCLHGSAILPNNGLNGHYLKAAQELLDEIVNVRKTLKQTGLENQQSFRDAGLDGSKDSDGKSTSQSMQMSSGPNGSNANNSTTELSPAERQHLLDKKTKLLSMLDEVDKRYRQYCHQMQIVVSSFDMVAGCGAAEPYTALALRTISRHFRCLRDAISGQIQVTQRSLGEQEGIPRLRYVDQQLRQQKALQQLGVMRQAWRPQRGLPESSVSILRAWLFEHFLHPYPKDSEKIMLARQTGLTRNQVANWFINARVRLWKPMVEEMYKEEFGDSETSSNLLSENTPKAPRDEDLRAWDDKRDESHDKLITIDSVQQQGQIAGLKLDHASSSATTATELERGIQSNDHWTNVMDSRIGKMQGDQQRFNMNNSPYSNAPISINQNGENCIMDSTPTTYDDLSELSNFAVGGHVSLALELRNSESDGFGLSNDDVSKRRNQTLASSPDNDLLDYHFTDNGKQQHKFGSPHLLHEFVV 628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g05850 628 Pfam Associated with HOX 171 313 IPR006563 -
Vivi4g05850 628 SMART prehox3 159 314 IPR006563 -
Vivi4g05850 628 Pfam Homeobox KN domain 372 411 IPR008422 GO:0003677|GO:0006355
Vivi4g05850 628 MobiDBLite consensus disorder prediction 199 242 - -
Vivi4g05850 628 SUPERFAMILY Homeodomain-like 356 422 IPR009057 -
Vivi4g05850 628 Gene3D - 352 430 - -
Vivi4g05850 628 ProSiteProfiles 'Homeobox' domain profile. 352 415 IPR001356 GO:0003677
Vivi4g05850 628 MobiDBLite consensus disorder prediction 424 450 - -
Vivi4g05850 628 CDD homeodomain 355 416 IPR001356 GO:0003677
Vivi4g05850 628 Coils Coil 175 195 - -
Vivi4g05850 628 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 137 436 - -
Vivi4g05850 628 SMART HOX_1 355 419 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g05850 Vivi-Chr4 194977623 194981504 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Vivi4g05850 POX 1e-49 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi4g05850 4 194977623 194981504 Vivi4g05850 4 194977623 194981504 ECH
Vivi4g05850 4 194977623 194981504 Vivi3g00512 3 8758783 8761324 PCT
Vivi3g00513 3 8777373 8781034 Vivi4g05850 4 194977623 194981504 PCT