Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g05846 ATGATGAAAATCTGCGCATGCCTTCACACTTCCTCTTACTATTCTTCTTCACTACCATTACCACCATCAACAATTCAACTTCAACAACATCGTTTTCATCATTTTCTTAATTTTCCTTTTCGCTCTCTATCCTCATCCACTCTCTCTCTTCACGCTACACCGCGCGAAATCGAACTTCATCTCTCTTCCTCCAACGACACCGTTTTATCACAAAACCCTACACCGCCGCAATTAGAAGAATCACCTCCTCCAACTCCACTCGTTCTCTCCGGCGAAGATAACAAAACCACTAATAATAAGCTTAAAAAGAAGAAAAATCAAAACGACGATAACAGTACCAACTTCGATGACCGTTTCAAGCTCCGTAACGGAAAAGAGGTTTTTGAAGAGAAAGCTTATCTGGTTGGTGTTGAGCGAAAAGGTGATGTGAGTGATTCTTTTGGTATACAAGATTCTTTGAGTGAATTGAAACAGTTAGCTGATACTGCTGGATTGTTGGTTGTTGACTCTACATATCAGAAGCTTGCTTCTCCAAACCCTAGGACTTACATTGGATCTGGCAAAGTTTCTGAAATTAAGAGTGCAATTAATGCATTGGATGTTGAAACTGTGATATTTGATGATGAACTATCAGCTGGGCAACTGCGCAACCTGGAAAAGGTTTTTGGTGGTGATGTGAGAGTTTGCGATCGAACTGCTCTCATCCTTGATATATTTAATCAGCGAGCAGCAACACATGAAGCATCTTTACAGGTTTCATTAGCACAAATGGAATACCAACTACCTCGTCTAACAAAAATGTGGACTCATCTTGAGCGTCAATCAGGAGGACAGGTGAAGGGAATGGGTGAAAAACAAATAGAAGTGGACAAGCGTATTTTGCGTAACCAAATTGGTGTCCTTAAAAAAGAGCTAGAATCTGTTAGGAAACACCGAAAGCAGTATCGTAGTAGGCGTGTCTCAGTACCTGTGCCAGTGATATCTTTGGTCGGTTATACGAATGCTGGTAAGAGTACGCTTTTAAATCAATTAACTGGAGCAGATGTTCTTGCCGAGGATAAATTATTTGCAACTTTAGATCCAACTACAAGGAGGGTACAGATGAAGAATGGAAAGGAGTTTCTCCTAACAGACACTGTTGGTTTTATTCAGAAGTTACCTACTACACTAGTTGCTGCCTTCAGAGCCACACTCGAGGAAATATCAGAGTCATCACTTCTGGTGCATGTTGTTGATATCAGTCACCCCCTGGTTGAGCAACAGATAAATGCTGTGGACAAAGTTCTATCAGAACTAGATGTATCATCAATACCAAGATTGATGGTTTGGAACAAGATTGATAAGGCTAGTGATCCCCAGAAAATCAGACTAGAAGCTGAAAAAAGAGATGATGTTGTATGCATATCTGCTTTAAGTGGCGATGGGTTACAAGAATTCTGTAATGCAGTTCAAGAAAAACTAAAGGACTCAATGGTATGGGTGGAAGCTTTGTTACCATTTGAAAATGGGGACCTTCTCAGCACCATACACCAAGTTGGAATGGTTGAGAAAACTGAATATACAGAGCAAGGGACATATATCAAGGCTCATGTGCCCCTACGTTTTGCAAGATTGCTTACACCTATGAGGCAACTGTGTGTATCACGACCTTGA 1653 0.4083 MMKICACLHTSSYYSSSLPLPPSTIQLQQHRFHHFLNFPFRSLSSSTLSLHATPREIELHLSSSNDTVLSQNPTPPQLEESPPPTPLVLSGEDNKTTNNKLKKKKNQNDDNSTNFDDRFKLRNGKEVFEEKAYLVGVERKGDVSDSFGIQDSLSELKQLADTAGLLVVDSTYQKLASPNPRTYIGSGKVSEIKSAINALDVETVIFDDELSAGQLRNLEKVFGGDVRVCDRTALILDIFNQRAATHEASLQVSLAQMEYQLPRLTKMWTHLERQSGGQVKGMGEKQIEVDKRILRNQIGVLKKELESVRKHRKQYRSRRVSVPVPVISLVGYTNAGKSTLLNQLTGADVLAEDKLFATLDPTTRRVQMKNGKEFLLTDTVGFIQKLPTTLVAAFRATLEEISESSLLVHVVDISHPLVEQQINAVDKVLSELDVSSIPRLMVWNKIDKASDPQKIRLEAEKRDDVVCISALSGDGLQEFCNAVQEKLKDSMVWVEALLPFENGDLLSTIHQVGMVEKTEYTEQGTYIKAHVPLRFARLLTPMRQLCVSRP 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g05846 550 Gene3D - 243 310 - -
Vivi4g05846 550 ProSiteProfiles HflX-type guanine nucleotide-binding (G) domain profile. 325 491 IPR030394 GO:0005525
Vivi4g05846 550 NCBIfam small GTP-binding protein domain 326 481 IPR005225 GO:0005525
Vivi4g05846 550 Hamap GTPase HflX [hflX]. 153 516 IPR016496 GO:0005525
Vivi4g05846 550 NCBIfam GTPase HflX 132 487 IPR016496 GO:0005525
Vivi4g05846 550 Pfam 50S ribosome-binding GTPase 327 445 IPR006073 GO:0005525
Vivi4g05846 550 Pfam GTP-binding GTPase N-terminal 151 239 IPR025121 -
Vivi4g05846 550 PANTHER GTP-BINDING PROTEIN HFLX 98 534 IPR016496 GO:0005525
Vivi4g05846 550 Gene3D - 144 242 IPR042108 -
Vivi4g05846 550 PRINTS GTP1/OBG GTP-binding protein family signature 394 412 IPR006073 GO:0005525
Vivi4g05846 550 PRINTS GTP1/OBG GTP-binding protein family signature 327 347 IPR006073 GO:0005525
Vivi4g05846 550 MobiDBLite consensus disorder prediction 65 117 - -
Vivi4g05846 550 FunFam Predicted protein 144 266 - -
Vivi4g05846 550 MobiDBLite consensus disorder prediction 96 117 - -
Vivi4g05846 550 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 325 498 IPR027417 -
Vivi4g05846 550 Gene3D - 324 492 IPR027417 -
Vivi4g05846 550 CDD HflX 284 487 IPR030394 GO:0005525
Vivi4g05846 550 FunFam GTPase HflX 324 493 - -
Vivi4g05846 550 Pfam GTP-binding GTPase Middle Region 242 319 IPR032305 -
Vivi4g05846 550 Pfam HflX C-terminal domain 457 525 IPR045498 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g05846 Vivi-Chr4 194916659 194922478 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi4g05846 4 194916659 194922478 Vivi4g05846 4 194916659 194922478 ECH