Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g05810 ATGTCATTCAAGAGTATTGTGAGAGAGATCAAGGAGATGAAAGAAGGAATTGGAAATATGTATAGAAAAAGGGTAGAAGCTAAGAATATGTATAGACATGGAAAATCTCATATTGCCCCAGAATGTTCATCACCAATATCATTATCACTATCACCAACTGAAACTCCGTCTTCATCGTTATCGCCATCGTCACAAAGCAAATGGGCTAATTTACCTCCTGAGTTGCTATTAGACATAATTCAAAGAGTGGAAGCTAGTGAAACCTCTTGGCCGTCTCGCCGAGCAATTGTAGCTTGTGCCTTAGTTTGTAGATTATGGAGAGAGATAACAAAAAGTGTGGTTAAGACACCTGAACAATGTGGTTGGATCACTTTCCCTATATCTTTGAAGCAGCCTGGTCCAAGAGACAACACAATTCAGTGTTTTATTAAAAGAGAAAGGGTTTCTTCTACATATAGTTTATATCTTGGTTTGAGCCCAGCTCTTTCTGGTGATATGAGCAAACTTCTCTTGGCAGCAAAGAAGATAAGAAGAGCAACGTGTACAGAATTTTTAATATCATTGGTTTCTAATGATTTCTCTCAAGCTAGCAATACTTACATTGGAAAGTTAAGGTCTAATTTTCTCGGAACGAAGTTCACGATCTTGGACGGTCATCTTCCACATGATTCTTCGCTTCCATTGAGTTGTAAGTTGCATCAAAAGGTCCATCGGAAACAAGTACATCCGAGAGCTGCTTCTGCTAACTTTAAAGTAGCAACGGTATCTTATGAACTTAATGTTCTTCGTACGAGAGGTCCAAGGCGAATGCGGTGTACAATGCACTTAATTCCGATATCTTCAGTCCAAGAGGGAGGGACTGCTCCTACTCCCATGGAGTTTAGCAATTGTCGTAATGAGCGTGAATCTTCAAAAGGAAAGAAACCAGAAGTTGTTGAATTTGGCTCAACTTGCTCCGATTTTGCAAGAGAACCACTGATTTTGAAAAACAAAGCACCTAGATGGCATGAACAACTTCAATGTTGGTGCTTGAATTTCAAGGGACGGGTTACGGTGGCTTCGGTTAAGAATTTCCAGCTTGTAGCAGCTGCAGAACCTTGCCATAACGTTTCGGCTGCCGAACAAGAGAAAGTTATACTTCAATTTGGAAAAATTGGCAAGGACATATTCACTATGGATTTTCGATATCCTCTTTCTGCTTTTCAAGCTTTCGCAATCTGTTTGAGTAGCTTTGATACAAAACCAGCTTGTGAATAA 1257 0.3978 MSFKSIVREIKEMKEGIGNMYRKRVEAKNMYRHGKSHIAPECSSPISLSLSPTETPSSSLSPSSQSKWANLPPELLLDIIQRVEASETSWPSRRAIVACALVCRLWREITKSVVKTPEQCGWITFPISLKQPGPRDNTIQCFIKRERVSSTYSLYLGLSPALSGDMSKLLLAAKKIRRATCTEFLISLVSNDFSQASNTYIGKLRSNFLGTKFTILDGHLPHDSSLPLSCKLHQKVHRKQVHPRAASANFKVATVSYELNVLRTRGPRRMRCTMHLIPISSVQEGGTAPTPMEFSNCRNERESSKGKKPEVVEFGSTCSDFAREPLILKNKAPRWHEQLQCWCLNFKGRVTVASVKNFQLVAAAEPCHNVSAAEQEKVILQFGKIGKDIFTMDFRYPLSAFQAFAICLSSFDTKPACE 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g05810 418 PRINTS Tubby superfamily signature 200 224 IPR000007 -
Vivi4g05810 418 PRINTS Tubby superfamily signature 184 200 IPR000007 -
Vivi4g05810 418 PRINTS Tubby superfamily signature 328 345 IPR000007 -
Vivi4g05810 418 PRINTS Tubby superfamily signature 396 418 IPR000007 -
Vivi4g05810 418 PRINTS Tubby superfamily signature 249 276 IPR000007 -
Vivi4g05810 418 PRINTS Tubby superfamily signature 346 362 IPR000007 -
Vivi4g05810 418 PRINTS Tubby superfamily signature 375 394 IPR000007 -
Vivi4g05810 418 Pfam F-box domain 68 114 IPR001810 GO:0005515
Vivi4g05810 418 ProSitePatterns Tub family signature 2. 403 418 IPR018066 -
Vivi4g05810 418 MobiDBLite consensus disorder prediction 42 66 - -
Vivi4g05810 418 Gene3D Tubby Protein; Chain A 126 418 IPR025659 -
Vivi4g05810 418 SUPERFAMILY F-box domain 60 112 IPR036047 GO:0005515
Vivi4g05810 418 PANTHER TUBBY-RELATED 60 416 - -
Vivi4g05810 418 SUPERFAMILY Tubby C-terminal domain-like 117 418 IPR025659 -
Vivi4g05810 418 ProSitePatterns Tub family signature 1. 346 359 IPR018066 -
Vivi4g05810 418 Pfam Tub family 129 413 IPR000007 -
Vivi4g05810 418 Gene3D - 62 116 - -
Vivi4g05810 418 CDD F-box_AtTLP-like 68 111 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g05810 Vivi-Chr4 194484034 194486316 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Vivi4g05810 Tub 2.3e-103 CL0395
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi4g05810 4 194484034 194486316 Vivi4g05810 4 194484034 194486316 ECH