Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g05808 ATGAGTTGGAGAACTTTACTTTCACTTCATTCTTCAAGATACGCAATCAACAAACTCAAATCAATCTCAAATTCCCCATTTCCCACAACACTCTTCAAACCACTACCCGTTTCATCATTCACCGTTCACCGTAACCTTCATTCCCATTCCCCGGAACTCGGTAACTCGTTAATCGATCCATCACTCGGTACTCACTTCAAAAACGACACCGTTCATCGAAACGACGATGAAGACGAAACAACCAACGAGTTCCTCTCACGATTCGCGTGGATTATGCGGAAGAAGGTGAAGGAATCGTATCCCGAGAGCGACAAGAGCACTGTTGATGCGATGTTACTTGTGATTGTGGAAAGAGTTGCTTCGGAAATGGAGAAGGATGGTGGTGCGACGGCGGAATTTTCGTCTTTTGAATCGGTGGATTTCAGTGAGGATCTTTGGAGGACTGTGTGGGAGGTTAGTAATAAGGTGTTGGTTGATATGAATAAAGAGAGGAAGAAGGAGAAAATGAAAGGGTTTTTGCAGTGTGATGAGGTGAAAGAGATGTGTAGGTTCGCCGGTGAGGTTGGTATTCGGGGTAATTTGCTTCGAGAGCTTAGGTTTAAATGGGCGCGCGAGAAAATGGAGGAACACGAGTTTAATGAGGATTTGGAGAAATTGAGGAAAGAGGGAGAGGTTGTTGAAGAAGAAGTTGAAAATGATAAGGAAACTGAAACTAATGTTGATGGTGATGTTCTTGTTGATGGCAATGTTGAGGAGAAGAAGGTTGTTGGGCTTCCGAAGAGGAAAGGGAAAATGAGGTTTAAGATATATGGGCTTGATTTATCTGATCCTAAATGGGAGCAAGTTGCGGATAGGATTCATGAGGCGGGAGAAGTTCTTTGGCCGAAGGAGGCAAAGCCGATAACTGGGAAATGCAAACAAGTTACTGAGAAAATTTTGTCGTTGAAGAAGGAGGATGGGGATGATAATTTGTTAAACCTGTTGGCTGAGTGGGTAGAGCTTCTACAGCCTGCTAGGGTGGATTGGATCAATTTGCTTGATAGGTTGAAAAACCAGAATTCTCCTTTTTACTTCAAGGTGGCAGAAATGGTATTGACCGAAGATTCTTTCCAAACAAATATATCTGACTACTCTAGGCTTATTGATATGTATGCTAAAGAGAACCGCATTGATGATACCGAGAGGATGCTTAAGAAGATGAATGAAAATGGTATAAAGCTAGATGCTTCGATAGCCAGTGTGTTGGTTCACATGTACAGCAAGATAGGTAATCTGGAACGTGCAGAAGAAGCATTGAAAGTCTTGAATGATCTGGGTTTCCAACCAGACACTAAAGTCTACAACTCAATGATCATGGCCTATATAAATGCCGGTGAACCTACAAAAGGCGAGACACTGATGAGGCAGATGGACACCCGAGATATTAAGCCCACAAAGGAAATATACATGTCATTGCTCAGATACTATTCCCAACGTGGTGACTTTGATCGTGCTTCACGAACTTCAACATCTCTGCAGTTTGCAGGACACCAGCAGACTATGGAGACATGCACCCTGCTCATTGAAGCAGCTGCAGTTTCAGGTGACCTAGATAAGGTAAGCTCCAATTTTGACCACATGGTACAACTTGGGCATAAGCCTGATGATAGGTGCACTGCTGCCATGATTAGTGCTTATGAGAAGACAAATTTATTGGACAAAGCATTGGATCTTCTTTTGACGTTAGAGAAGGATGGGTTTGAGCCTGGGGTTGCAACTTATTCTGTTCTTATTGATTGGCTGGCCAAAATGCAGCTTGTTGATGAAGCTGAACAGATTTTAAACAAAATTGCTCTGCTGGGTGAGGCTCCTCCTTTTAAGGTTCAAGTTAGTCTCTGTGATATGTATGCAAGGACTAAAATGGAGAAAAAGGCCCTTCAAACACTAGGCGTTCTAATAGCTAGGAAGAACGAATTAAAAGAACTCGAGTTTCAGAGGGTTATAGCCGGCCTTGTTGGTGGCGGGTTTATGCGGGACGCACAAAGAATGCTTGGGATCATGGAGGCACAGGGTTTCAAACCATCTGGACAGCTTATTTCAGCCCTTAAATCTGGCGACTTACTATTAAGTATGAGGTCATGA 2121 0.4314 MSWRTLLSLHSSRYAINKLKSISNSPFPTTLFKPLPVSSFTVHRNLHSHSPELGNSLIDPSLGTHFKNDTVHRNDDEDETTNEFLSRFAWIMRKKVKESYPESDKSTVDAMLLVIVERVASEMEKDGGATAEFSSFESVDFSEDLWRTVWEVSNKVLVDMNKERKKEKMKGFLQCDEVKEMCRFAGEVGIRGNLLRELRFKWAREKMEEHEFNEDLEKLRKEGEVVEEEVENDKETETNVDGDVLVDGNVEEKKVVGLPKRKGKMRFKIYGLDLSDPKWEQVADRIHEAGEVLWPKEAKPITGKCKQVTEKILSLKKEDGDDNLLNLLAEWVELLQPARVDWINLLDRLKNQNSPFYFKVAEMVLTEDSFQTNISDYSRLIDMYAKENRIDDTERMLKKMNENGIKLDASIASVLVHMYSKIGNLERAEEALKVLNDLGFQPDTKVYNSMIMAYINAGEPTKGETLMRQMDTRDIKPTKEIYMSLLRYYSQRGDFDRASRTSTSLQFAGHQQTMETCTLLIEAAAVSGDLDKVSSNFDHMVQLGHKPDDRCTAAMISAYEKTNLLDKALDLLLTLEKDGFEPGVATYSVLIDWLAKMQLVDEAEQILNKIALLGEAPPFKVQVSLCDMYARTKMEKKALQTLGVLIARKNELKELEFQRVIAGLVGGGFMRDAQRMLGIMEAQGFKPSGQLISALKSGDLLLSMRS 706
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g05808 706 Coils Coil 209 236 - -
Vivi4g05808 706 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 583 617 IPR002885 -
Vivi4g05808 706 Coils Coil 383 403 - -
Vivi4g05808 706 Gene3D Tetratricopeptide repeat domain 435 505 IPR011990 GO:0005515
Vivi4g05808 706 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 443 477 IPR002885 -
Vivi4g05808 706 PANTHER OS07G0661900 PROTEIN 91 690 - -
Vivi4g05808 706 Pfam Pentacotripeptide-repeat region of PRORP 385 500 IPR033443 -
Vivi4g05808 706 Gene3D Tetratricopeptide repeat domain 306 434 IPR011990 GO:0005515
Vivi4g05808 706 Pfam PPR repeat 554 580 IPR002885 -
Vivi4g05808 706 Pfam PPR repeat 586 610 IPR002885 -
Vivi4g05808 706 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 548 582 IPR002885 -
Vivi4g05808 706 Gene3D Tetratricopeptide repeat domain 506 700 IPR011990 GO:0005515
Vivi4g05808 706 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 373 407 IPR002885 -
Vivi4g05808 706 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 513 547 IPR002885 -
Vivi4g05808 706 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 408 442 IPR002885 -
Vivi4g05808 706 NCBIfam pentatricopeptide repeat 377 409 IPR002885 -
Vivi4g05808 706 NCBIfam pentatricopeptide repeat 446 478 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g05808 Vivi-Chr4 194477821 194481025 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi4g05808 4 194477821 194481025 Vivi4g05808 4 194477821 194481025 ECH