Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g05797 ATGGCTTCAAATTCATCTTGGACAACAAAGCAGAACAAAAAGTTTGAGAATGCTTTGGCCATCTATGACAAGGACACACCAGACAGATGGCAAAAGCTAGCAAAGGCTGTTGGAGGAAAGACAGTGGAAGAGGTGAAAAGACATTATGAGATGCTGGTTGAAGATTTGAAACAGATTGAAGAAGGTCATGTTCCATTACCAAAATACAGAAATGCTCAAACCATAAGAGAAAGTAGCATCAAAATTAGTTACACTCTTACTGATGAAGAACAAAGGTTGAAGTTTCTAAGCATTCAGTGA 300 0.38 MASNSSWTTKQNKKFENALAIYDKDTPDRWQKLAKAVGGKTVEEVKRHYEMLVEDLKQIEEGHVPLPKYRNAQTIRESSIKISYTLTDEEQRLKFLSIQ 99
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g05797 99 Pfam Myb-like DNA-binding domain 5 52 IPR001005 -
Vivi4g05797 99 FunFam Transcription factor SRM1 1 66 - -
Vivi4g05797 99 Gene3D - 1 66 - -
Vivi4g05797 99 ProSiteProfiles Myb-like domain profile. 1 53 IPR001005 -
Vivi4g05797 99 SMART sant 3 55 IPR001005 -
Vivi4g05797 99 SUPERFAMILY Homeodomain-like 6 60 IPR009057 -
Vivi4g05797 99 ProSiteProfiles SANT domain profile. 2 57 IPR017884 -
Vivi4g05797 99 PANTHER MYB FAMILY TRANSCRIPTION FACTOR-RELATED 3 76 IPR044636 GO:0003700
Vivi4g05797 99 CDD SANT 6 53 IPR001005 -
Vivi4g05797 99 Coils Coil 42 62 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g05797 Vivi-Chr4 194396793 194399298 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vivi4g05797 Myb_DNA-binding 4e-06 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi4g05797 4 194396793 194399298 Vivi4g05797 4 194396793 194399298 ECH
Vivi4g05797 4 194396793 194399298 Vivi3g00400 3 6910847 6911434 PCT