Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g05700 ATGATAGTGAGAAAAGAGAGAAAAGAGGACATCATGTTTGGCGACAACAGAAAAAACAACAACAGCAACAATGGTAACAATAACAATAACAATGTTCCTCGTCCTCAATTCATGCAATCCGAACCTCGGCTTTCCACTACCGATGCCTATTCAGACGACGACTATGCAAAGCGTAGCAGCAGCGCCGCCTCTCCCATGAGCCCTTACTACTATGACCCTGTCAGGTTAAGTGGTGAGGGCTCACCAATGATGATGTCACCATGGAATCAAACAACAAATTCACCATTCGCAAAGCCACAATGGTCACAATGCGAAGAAGCACCACCACAGAATTCCCTAATCGGCTCTCTCGTTCGCGAAGAAGGTCACATCTACTCATTGGCAGCTTCCGGCGACTTATTATACACCGGCTCCGACAGCAAGAACATCCGCGTGTGGAAGAATCTTCAAGAATACTGCGGATTCAAATCCAACAGTGGACTAGTAAAAGCAATAATAATCTCCGGTCAAAAAATCTTCACCGGTCACCAAGACGGAAAAATTCGAGTCTGGAAAGTCTCCGTCAAGAACCCTAGCATCCACAAACGCGCCGGAACATTACCAACGCTCAAAGACATTTTCAAAAGCTCCATTAAACCAAGCAACTACGTCGAGGTTCGTAAACACCGCACCGCGTTATGGATCAAACACTCCGACGCCGTTTCATGTCTCAGCCTTTCACCGGACAAAACCTACCTCTACTCCGCTTCATGGGATCGAACAATCAAAGTATGGAGAATCAGCGATTCGAAGTGCTTGGAATCCATAACCTCACACGAAGACGCGGTGAACTCCGTCGTGTGCGGCAACGACGGTGTAGTTTTCTCCGGTTCCGCTGACGGAACGGTTAAGGTGTGGAGAAGAGAGGCACGTGGGAAAGGAACGAAGCACGTGGCGGTTAAAACGCTTTTGAAACAGGAATGTGCGGTTACGGCTCTAGCGGTCGACTCGTCCGGTTCAATGGTTTATTGTGGTGCTTCGGATGGGTTGGTTAATTTTTGGGAACGTGATAAGCAATTTGCGCACGGTGGGGTTCTGAAGGGTCATAAATTAGCGGTTTTGTGTTTAGCTTCGGCCGGGAATTTGGTTTTTAGCGGTTCAGCTGATAAAACCATATGCGTGTGGAAAAGAGACGGCGTTATTCACACGTGTGTTTCTGTTTTAACGGGACATGACGGTCCCGTTAAGTGTTTAGCGGTGGAGCAAGATCGTGATAATGCTGGTGGGAGAGATCAACGGTGGGTGTTGTATAGTGGAAGTTTGGATAAATCTGTTAAAGTTTGGAGTGTTTCTGAGAGTTTGCAGCATCACAGGATTGCTTCTGATTCTGATTCGGTGCCTTCTGAATCGGACGGTAGTTATTCTTCGAGTCGGGCCGGGCATAATAAACGGCATTGA 1437 0.4739 MIVRKERKEDIMFGDNRKNNNSNNGNNNNNNVPRPQFMQSEPRLSTTDAYSDDDYAKRSSSAASPMSPYYYDPVRLSGEGSPMMMSPWNQTTNSPFAKPQWSQCEEAPPQNSLIGSLVREEGHIYSLAASGDLLYTGSDSKNIRVWKNLQEYCGFKSNSGLVKAIIISGQKIFTGHQDGKIRVWKVSVKNPSIHKRAGTLPTLKDIFKSSIKPSNYVEVRKHRTALWIKHSDAVSCLSLSPDKTYLYSASWDRTIKVWRISDSKCLESITSHEDAVNSVVCGNDGVVFSGSADGTVKVWRREARGKGTKHVAVKTLLKQECAVTALAVDSSGSMVYCGASDGLVNFWERDKQFAHGGVLKGHKLAVLCLASAGNLVFSGSADKTICVWKRDGVIHTCVSVLTGHDGPVKCLAVEQDRDNAGGRDQRWVLYSGSLDKSVKVWSVSESLQHHRIASDSDSVPSESDGSYSSSRAGHNKRH 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g05700 478 SMART WD40_4 262 300 IPR001680 GO:0005515
Vivi4g05700 478 SMART WD40_4 148 185 IPR001680 GO:0005515
Vivi4g05700 478 SMART WD40_4 309 348 IPR001680 GO:0005515
Vivi4g05700 478 SMART WD40_4 394 442 IPR001680 GO:0005515
Vivi4g05700 478 SMART WD40_4 110 147 IPR001680 GO:0005515
Vivi4g05700 478 SMART WD40_4 352 389 IPR001680 GO:0005515
Vivi4g05700 478 SMART WD40_4 220 259 IPR001680 GO:0005515
Vivi4g05700 478 ProSiteProfiles Trp-Asp (WD) repeats profile. 269 299 IPR001680 GO:0005515
Vivi4g05700 478 MobiDBLite consensus disorder prediction 1 15 - -
Vivi4g05700 478 MobiDBLite consensus disorder prediction 1 64 - -
Vivi4g05700 478 MobiDBLite consensus disorder prediction 449 478 - -
Vivi4g05700 478 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 61 446 IPR045182 -
Vivi4g05700 478 Pfam WD domain, G-beta repeat 357 389 IPR001680 GO:0005515
Vivi4g05700 478 Pfam WD domain, G-beta repeat 121 147 IPR001680 GO:0005515
Vivi4g05700 478 Pfam WD domain, G-beta repeat 230 258 IPR001680 GO:0005515
Vivi4g05700 478 Pfam WD domain, G-beta repeat 321 347 IPR001680 GO:0005515
Vivi4g05700 478 Pfam WD domain, G-beta repeat 264 299 IPR001680 GO:0005515
Vivi4g05700 478 Pfam WD domain, G-beta repeat 396 442 IPR001680 GO:0005515
Vivi4g05700 478 MobiDBLite consensus disorder prediction 16 46 - -
Vivi4g05700 478 ProSiteProfiles Trp-Asp (WD) repeats profile. 227 268 IPR001680 GO:0005515
Vivi4g05700 478 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 227 264 - -
Vivi4g05700 478 Gene3D - 213 307 IPR015943 GO:0005515
Vivi4g05700 478 FunFam BnaA09g28200D protein 217 304 - -
Vivi4g05700 478 Gene3D - 308 474 IPR015943 GO:0005515
Vivi4g05700 478 CDD WD40 121 442 - -
Vivi4g05700 478 SUPERFAMILY WD40 repeat-like 115 451 IPR036322 GO:0005515
Vivi4g05700 478 PRINTS G protein beta WD-40 repeat signature 246 260 IPR020472 -
Vivi4g05700 478 PRINTS G protein beta WD-40 repeat signature 287 301 IPR020472 -
Vivi4g05700 478 PRINTS G protein beta WD-40 repeat signature 429 443 IPR020472 -
Vivi4g05700 478 Gene3D - 88 212 IPR015943 GO:0005515
Vivi4g05700 478 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 269 299 - -
Vivi4g05700 478 ProSiteProfiles Trp-Asp (WD) repeats profile. 359 389 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g05700 Vivi-Chr4 193377649 193379715 Dispersed/Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g02791 3 46776128 46779877 Vivi4g05700 4 193377649 193379715 PCT