Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g05698 ATGCAAACTCTATTTTCATCTTCCATAGAACCTGACCTTTCTTTAAACATAAGTCCACCTTCTATTTCAGATTCTCTAGTCCAAAAAATGGAAAACTATAACAAAGGAATAACAAAAGCACTTTATCATCATCATCATAATGATAATAATAATAATATATGTTCAATATCAACTACTTCTGATTCTGCTAGTAGTGAAAGTGAGTTAAGCCATGAAAATCCCTTCATCCATAATCATCATCATCAATATCATCATGAGCCAACATTGAGATTAGGTTTTGGAAACTCAGATTTGATGAATCCACATCATCATAACCATCATCTTCACCATCATCAAGCTCACGGCGTCTCGAGAAACTTCATCCAACCTCACATCTACGGCCGCGATTTCAAACGTAATACACGAACCGGTGTCAAAAGAAGTGTTAGAGCTCCGAGAATGAGATGGACTACAACTCTTCATTCTCATTTCGTTCACGCTGTTCAACTTCTTGGCGGTCATGAAAGAGCAACACCAAAATCGGTGTTAGAGTTGATGAATGTGAAGGATCTAACCCTAGCACATGTCAAGAGTCACTTACAGATGTATAGAACAGTGAAAACCACTGACAAATCAGGAGCAGGTCATGGGATGCTACAGACACAAGGGATTATTAATAATGTTCCTTTGCATGGATCAGCTTGTGAGAGAACAATTTTACCACAACAAAGGACATCATGGCAAGCATCAATAGAGACAAATACAAACAATACTGAAGAAAAATCTGAAATTGGTTTGACGTATTCACATTTCAAGGAAAATGATACCATGGTGAAATGTTCAGACTCTATGATTGACTTAGAATTCACACTTGGGAGACCAAATTGGGAAAAAGAAAATGGTGAATCATCAAGAGAATTACCTCTTCTTAAGTGTTAA 918 0.3682 MQTLFSSSIEPDLSLNISPPSISDSLVQKMENYNKGITKALYHHHHNDNNNNICSISTTSDSASSESELSHENPFIHNHHHQYHHEPTLRLGFGNSDLMNPHHHNHHLHHHQAHGVSRNFIQPHIYGRDFKRNTRTGVKRSVRAPRMRWTTTLHSHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRTVKTTDKSGAGHGMLQTQGIINNVPLHGSACERTILPQQRTSWQASIETNTNNTEEKSEIGLTYSHFKENDTMVKCSDSMIDLEFTLGRPNWEKENGESSRELPLLKC 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g05698 305 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 11 292 IPR044847 GO:0000976|GO:0006355|GO:0010158
Vivi4g05698 305 Pfam Myb-like DNA-binding domain 146 197 IPR001005 -
Vivi4g05698 305 NCBIfam myb-like DNA-binding domain, SHAQKYF class 145 198 IPR006447 GO:0003677
Vivi4g05698 305 Gene3D - 144 201 - -
Vivi4g05698 305 FunFam Myb family transcription factor 143 201 - -
Vivi4g05698 305 SUPERFAMILY Homeodomain-like 142 198 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g05698 Vivi-Chr4 193328552 193332270 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vivi4g05698 Myb_DNA-binding 1.5e-05 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi4g05698 4 193328552 193332270 Vivi4g05698 4 193328552 193332270 ECH
Vivi4g05698 4 193328552 193332270 Vivi4g05685 4 193136615 193140321 PCT