Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g05692 ATGGAAGGAGGAGGAGGAGGGCAAAGCCGCAACAGCTTCAAATCATGGCAGGAAGAAATTTACTGGACCCATTTCCAGTTCATCCATTTCACTCAATTTCTTCACAAAGATTTCCAACAACAACTTGCACTTCCCAAAACATTTTCGAACAATGTAAAGAAGAGGTTGCCAAAAAATGTGACCCTTAAAGGTCCTAGTGGAGTTGTGTATAATGTAGAACTGACAACTAGAGACGATACTTTTTACTTCACGAACGGTTGGCAACGATTCGTGAAAGACCACTCTTTGAAAGAGAATGATTTCCTTGTCTTTAAGTACAATGGTAAATCACACTTTGAGGTTTTAATCTTTGATGGAGAAAGCTTTTGCGAGAAAGCAGCTTCTTATTTTGTTGGAAAATACGAACTTGCTCAAACTGAACAAGGGGATGGCAAGGCAAAGGAAACAAACAATTCTGTTGAAGAAGTCAATATTGTTTCTAATGATGGTGTTGAATGTGGTTCGCGTGAGAAATTTCGGCATATTAACAATATAGGAACACCATTAGCCGCACCTTTTGAAACTACCAATGGAAAGACTTTTAATGCTGGTGTTGAATTTGCTTCACCGGAGCAGGTCATGGCCGATGCAGTCACTAAGACCGCATCAGCAGCGTTTCCCTCCCAACCAACCGGTAAACGGACCAAGAGGCCTGATAATGAGGCTACAGATGTCCAGAATAACCGGCGAGGAACATCACCAGTAGCAGGTTGGAAAACTGACTTTTTTAGTATGCTTAGCGCAAAACACGGTGTCGCTTCCCCTGAGACTTCTAAAGATATGCCAATGAATCCTAAAGTCAGCTCAAAACGCAAAAACAAAGTTGATCTGTCGGATACTTTGAAGAAGATTGGTCAAGAAGCTGTTTTATCCTCCGAATTTAAGAAATCCGGTGGAGCTTCAAATACTTTGAAGAAGATTCGTCAAGAAGCTGTTTTATCCACCGAGTTGAACAAATCTGGTGAAGCTTCAAATACTTTGAAGAAGAAAGGTCAAGAAGCTGTTTTATCCACCGACTTGAAGAAATCTGGTGAAGCTTCAAATTCTTCGAAGAAGATTGGTCAAGAAGCTGTTTTATCCACTGACTTGAAGAAATCTGGTGAAGCTTCAAATACTTTGAAGAAGATTGGCCAAGAAGCTGTTTTATCAACCGAATCGAAGAAATCTGACGAAGCTTCAAATACTATGAAGAAAATTGGGATTTGCTCCATGTCGAAAACTGCTCATAAAAAGTTGGCTACACCGAAGAGACATCTTGTTGAAGATGAACTAAGCTCCCAGGCTAAAGCTGATTTGAAAATGTTGGCTTCACTCGAAAAACAAAAAGCAGCTGAAGCTCTTAATTCCCCATTTCCTAATTTTGTGACAATCATGAAGAAGTTAAATGTCTGTGGATCACGCACTTTGAGAATCCCACAGGAGTTCGCTTCTGCTCATCTCCCCGACTACAAAACAGAACTTACACTTCGTAATCCAAGAGGCAAATGTTGGACTGTGAACTCCATCCCAGATTCTAAAGGGGGAAAAGCTCACACTTTGTGTGGGGGATGGATGGCCTTTGTTCGTGATAATGGCATAAATATTGGCGACACGTGCATTTTCGAGCTCGTTTCGAATCTTGTTTTCCAGGTTCATATATCTCGAGTCGGAAAGGAAGATCTTGACAATCAAAATGGGACTGTGAAACCTAATGATGCTCCATCTACCTGCTAA 1752 0.4098 MEGGGGGQSRNSFKSWQEEIYWTHFQFIHFTQFLHKDFQQQLALPKTFSNNVKKRLPKNVTLKGPSGVVYNVELTTRDDTFYFTNGWQRFVKDHSLKENDFLVFKYNGKSHFEVLIFDGESFCEKAASYFVGKYELAQTEQGDGKAKETNNSVEEVNIVSNDGVECGSREKFRHINNIGTPLAAPFETTNGKTFNAGVEFASPEQVMADAVTKTASAAFPSQPTGKRTKRPDNEATDVQNNRRGTSPVAGWKTDFFSMLSAKHGVASPETSKDMPMNPKVSSKRKNKVDLSDTLKKIGQEAVLSSEFKKSGGASNTLKKIRQEAVLSTELNKSGEASNTLKKKGQEAVLSTDLKKSGEASNSSKKIGQEAVLSTDLKKSGEASNTLKKIGQEAVLSTESKKSDEASNTMKKIGICSMSKTAHKKLATPKRHLVEDELSSQAKADLKMLASLEKQKAAEALNSPFPNFVTIMKKLNVCGSRTLRIPQEFASAHLPDYKTELTLRNPRGKCWTVNSIPDSKGGKAHTLCGGWMAFVRDNGINIGDTCIFELVSNLVFQVHISRVGKEDLDNQNGTVKPNDAPSTC 583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g05692 583 MobiDBLite consensus disorder prediction 215 249 - -
Vivi4g05692 583 CDD B3_DNA 29 118 IPR003340 GO:0003677
Vivi4g05692 583 SUPERFAMILY DNA-binding pseudobarrel domain 25 118 IPR015300 -
Vivi4g05692 583 ProSiteProfiles B3 DNA-binding domain profile. 467 563 IPR003340 GO:0003677
Vivi4g05692 583 SUPERFAMILY DNA-binding pseudobarrel domain 460 561 IPR015300 -
Vivi4g05692 583 MobiDBLite consensus disorder prediction 263 288 - -
Vivi4g05692 583 CDD B3_DNA 465 561 IPR003340 GO:0003677
Vivi4g05692 583 Gene3D - 449 564 IPR015300 -
Vivi4g05692 583 SMART B3_2 467 563 IPR003340 GO:0003677
Vivi4g05692 583 SMART B3_2 27 120 IPR003340 GO:0003677
Vivi4g05692 583 Gene3D - 23 123 IPR015300 -
Vivi4g05692 583 Pfam B3 DNA binding domain 38 118 IPR003340 GO:0003677
Vivi4g05692 583 Pfam B3 DNA binding domain 467 560 IPR003340 GO:0003677
Vivi4g05692 583 ProSiteProfiles B3 DNA-binding domain profile. 27 120 IPR003340 GO:0003677
Vivi4g05692 583 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 34 565 IPR044837 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g05692 Vivi-Chr4 193225688 193228887 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vivi4g05692 B3 2e-16 CL0405
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi4g05692 4 193225688 193228887 Vivi4g05692 4 193225688 193228887 ECH