Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g05657 ATGCAACCATCGAACGGCTCTGATTCAACCACTCCGCAGGCGGAGACAAACAAACCGCAACGTCAACCAACGCCTCAGGCGGTGGCGGTGCCGCAGCAGTGGGTTCCGATGCAGTATCCAACGGCGATGGTAATGCCGCATCACATGATGCCGCCTCAGCATTTCGCTCCGCCGCCTTATGTGCCGTATCATCCTCACCATCAGTTTCAGCAGCAGCCGTTGCACGTGCCGCATCACCATCAGAATCATCATCAGCAGCATGGATCCAATGGAGAGAATAAGACTCTGTGGATTGGAGATTTGCATAACTGGATGGATGAGAATTATCTTCATCGTTGTTTTGCTTCCACCGGCGAGATTACCTCCATTAAGGTTATCCGCAATAAGCATAGTGGTATTTCAGAGGGATATGGATTTGTGGAATTTTTTTCACATGCCACAGCTGAGAAAGTTTTACAGAATTATGCTGGAATGTTGATGCCAAATGCTGATCAATCTTTCCGTCTGAACTGGGCTACTTTTAGCACAGGAGACAAGGGTTCAGATAATGTTACTGATCTTTCTATTTTTGTAGGAGATTTAGCTGCTGATGTTACAGATACTGTTTTGCATGAAACTTTTGCTAGTTCATATCCTTCTGTTAAAGCTGCAAAAGTTGTTTATGATGCCAACACTGGCCGTTCAAAGGGCTACGGGTTCGTCAGGTTTGGAGATGAAAGTGAGAGATCTCAGGCTATGACTCAAATGAATGGTGTTTACTGTTCTACCAGGCCCATGCGTATTGGTGCTGCAACTCCAAGGAAATCATCTGGCCATCAAGGTGGACAGTCAAATGGTACATCCAGCCAATCTGAGACAGACTCTACCAACACAACTATATTTGTTGGAGGACTCGACCCTAATGTTACAGATGAAGATCTTAGGCAGACATTCTCAGAGTATGGTGAGATAACCTCTGTTAAGATACCTGTTGGAAAGGGCTGTGGTTTTGTTCAATTTGCAAACAGAAATAATGCTGAAGAGGCTTTGCAGAAGCTTAATGGGACAATGATTGGCAAGCAAACTGTCCGTCTCTCTTGGGGTCGCAATCCTGCAAACAAACAGTTTAGGTTTGACTTTGGAAGCTGGGGCGGGCCATATTTTCCTTCCCCTGTTTATGATGGATACGGATATATGCCTTCTCCTCATCATGATCCAAGCGTGTATCCTCTTCCTTACGGGGGTTACCCTATTTATGGAGGTCACCAACAACAAGTAAGCTGA 1263 0.4561 MQPSNGSDSTTPQAETNKPQRQPTPQAVAVPQQWVPMQYPTAMVMPHHMMPPQHFAPPPYVPYHPHHQFQQQPLHVPHHHQNHHQQHGSNGENKTLWIGDLHNWMDENYLHRCFASTGEITSIKVIRNKHSGISEGYGFVEFFSHATAEKVLQNYAGMLMPNADQSFRLNWATFSTGDKGSDNVTDLSIFVGDLAADVTDTVLHETFASSYPSVKAAKVVYDANTGRSKGYGFVRFGDESERSQAMTQMNGVYCSTRPMRIGAATPRKSSGHQGGQSNGTSSQSETDSTNTTIFVGGLDPNVTDEDLRQTFSEYGEITSVKIPVGKGCGFVQFANRNNAEEALQKLNGTMIGKQTVRLSWGRNPANKQFRFDFGSWGGPYFPSPVYDGYGYMPSPHHDPSVYPLPYGGYPIYGGHQQQVS 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g05657 420 SUPERFAMILY RNA-binding domain, RBD 59 175 IPR035979 GO:0003676
Vivi4g05657 420 FunFam Polyadenylate-binding protein RBP47 277 392 - -
Vivi4g05657 420 MobiDBLite consensus disorder prediction 269 297 - -
Vivi4g05657 420 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 84 367 - -
Vivi4g05657 420 MobiDBLite consensus disorder prediction 1 32 - -
Vivi4g05657 420 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 94 174 IPR000504 GO:0003723
Vivi4g05657 420 CDD RRM3_NGR1_NAM8_like 290 361 - -
Vivi4g05657 420 SUPERFAMILY RNA-binding domain, RBD 188 364 IPR035979 GO:0003676
Vivi4g05657 420 SMART rrm1_1 188 262 IPR000504 GO:0003723
Vivi4g05657 420 SMART rrm1_1 292 359 IPR000504 GO:0003723
Vivi4g05657 420 SMART rrm1_1 95 170 IPR000504 GO:0003723
Vivi4g05657 420 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 291 363 IPR000504 GO:0003723
Vivi4g05657 420 Gene3D - 61 183 IPR012677 -
Vivi4g05657 420 MobiDBLite consensus disorder prediction 262 299 - -
Vivi4g05657 420 MobiDBLite consensus disorder prediction 1 31 - -
Vivi4g05657 420 Gene3D - 186 262 IPR012677 -
Vivi4g05657 420 FunFam Polyadenylate-binding protein RBP47B 175 276 - -
Vivi4g05657 420 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 187 266 IPR000504 GO:0003723
Vivi4g05657 420 FunFam Polyadenylate-binding protein RBP47B 93 173 - -
Vivi4g05657 420 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 293 356 IPR000504 GO:0003723
Vivi4g05657 420 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 189 253 IPR000504 GO:0003723
Vivi4g05657 420 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 96 161 IPR000504 GO:0003723
Vivi4g05657 420 Gene3D - 268 369 IPR012677 -
Vivi4g05657 420 CDD RRM2_SECp43_like 186 265 - -
Vivi4g05657 420 CDD RRM1_SECp43_like 95 175 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g05657 Vivi-Chr4 192538808 192543486 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g05657 72 371 Eukaryotic Initiation Factors Gene Family AT4G34110 29.221 1.52e-33 130
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi4g05657 4 192538808 192543486 Vivi4g05657 4 192538808 192543486 ECH
Vivi4g05657 4 192538808 192543486 Vivi3g01958 3 32336166 32339695 PCT