Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g05643 ATGTCAGGTATGGAGAGACTTCAAAGAATGTTCGCGGGTGCAGGTGGAGCACTCGGCGGCCATCCACCACCGGATTCCCCCACCCTAGATTCATCGGAGCAAGTTTACATCTCCTCTCTCGCTCTTCTCAAAATGCTCAAACACGGAAGGGCTGGTGTTCCTATGGAGGTTATGGGTTTGATGTTGGGGGAGTTTGTGGATGAGTATACAGTTCGCGTTGTTGATGTGTTTGCTATGCCCCAGAGTGGGACTGGTGTTAGTGTTGAAGCTGTTGATCATGTTTTTCAAACTAATATGCTTGATATGTTGAAACAAACTGGAAGACCAGAGATGGTTGTAGGTTGGTATCATTCACATCCTGGATTTGGCTGCTGGCTTTCTGGAGTGGACATTAATACTCAACAGAGTTTCGAGGCTTTAAATCAACGCGCAGTGGCAGTCGTGGTGGATCCTATTCAGAGTGTTAAAGGCAAGGTGGTGATTGATGCATTCCGGCTGATTAATCCACAAACTATGATGCTGGGTCAAGAACCACGACAGACAACCTCTAACCTTGGCCATTTGAACAAGCCATCTATTCAAGCTCTGATCCATGGCTTGAACCGACATTATTACTCAATAGCAATCAATTACAGGAAGAACGAGCTTGAAGAGAAGATGTTGCTTAACCTTCATAAGAAGAAGTGGACTGATGGTTTGACACTCAGACGATTCGATTCACATTCTAAAACTAATGAACAGACTGTTCAGGAGATGCTAAGTTTAGCAACCAAGTACAACAAGGCAGTGCAGGAGGAAGATGAGCTGCCCCCTGAAAAACTTGCAATTGCAAATGTGGGGAGGCAGGATGCTAAGAAGCACCTTGAAGAGCATGTTTCTAATTTAATGTCGTCGAACATTGTTCAGACTTTGGGAATGATGCTCGACACAGTTGTTTTCTAG 942 0.449 MSGMERLQRMFAGAGGALGGHPPPDSPTLDSSEQVYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDEYTVRVVDVFAMPQSGTGVSVEAVDHVFQTNMLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALNQRAVAVVVDPIQSVKGKVVIDAFRLINPQTMMLGQEPRQTTSNLGHLNKPSIQALIHGLNRHYYSIAINYRKNELEEKMLLNLHKKKWTDGLTLRRFDSHSKTNEQTVQEMLSLATKYNKAVQEEDELPPEKLAIANVGRQDAKKHLEEHVSNLMSSNIVQTLGMMLDTVVF 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g05643 313 CDD MPN_RPN11_CSN5 24 290 - -
Vivi4g05643 313 Gene3D Cytidine Deaminase, domain 2 23 238 - -
Vivi4g05643 313 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 31 142 IPR000555 GO:0005515|GO:0008233|GO:0008237
Vivi4g05643 313 SMART pad1_6 34 169 IPR000555 GO:0005515|GO:0008233|GO:0008237
Vivi4g05643 313 FunFam 26S proteasome non-ATPase regulatory subunit 24 238 - -
Vivi4g05643 313 SUPERFAMILY JAB1/MPN domain 35 172 - -
Vivi4g05643 313 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 -RELATED 30 310 - -
Vivi4g05643 313 ProSiteProfiles MPN domain profile. 35 170 IPR037518 -
Vivi4g05643 313 Pfam Maintenance of mitochondrial structure and function 177 300 IPR024969 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g05643 Vivi-Chr4 192380960 192384136 Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi4g05643 4 192380960 192384136 Vivi4g05643 4 192380960 192384136 ECH