Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g05636 ATGTCTACTAGGAATGAACAACATCAAACGGTTCCGCTTTCGGTTCTTTTGAAGCGTGAATTGATGAATGAGAAAATTGAGAAGCCTGAGATTTGTCATGGTCAAGCTGGACAAAGCAAGAAAGGAGAGGATTTAACATTGCTGAAGGCTGAGTGCCAGAGGATGGTTTCTGATGGGGTCTATACGTATTCTGTTTATGGGCTATTTGATGGACACAATGGATCTGCTGCTGCTATTTATTCTAAGGAGAATCTTCTAAATAATGTTTTAAGTGCAATTCCTCCCGATCTTAATGGAGACGAGTGGTTAGCAGCATTGCCTAGAGCTTTGGTTGCAGGCTTTGTCAAAACTGATAAAGATTTTGCACAGAATGGACAAAAATCAGGAACAACTGTCACCTTTGTGATCATAGAAGGATGGGTTGTTACGGTTGCATCAGTTGGCGATTCCCGCTGCGTACTAGAATCTTCTGAAGGCGGGATTTATTACTTGTCAGCAGATCATAGGCTAGAAACAAATGAAGAGGAGAGGGTTCGTATCACTTCTAGTGGGGGTGAGGTTGGTCGTTTAAATACAGGGGGAGGTGCAGAGGTTGGTCCTTTGAGATGTTGGCCCGGTGGCTTGTGCCTTTCACGATCTATTGGAGATATGGATATTGGTGAATTTGTTGTCCCTGTACCACATGTAAAACAAGTGAAGCTGTCCACTGCTGGAGGCCGGCTTGTTATCTGCAGTGACGGTGTTTGGGATTCTTTACCTGCAGAAGTGGCTCTTGATTGTTGTCGTGGCATGTCAGCAGAGGCTGCTGCACCACAGATTGTAAAAGAAGCTTTACAAGCTAAGGGACTTAGAGACGATACAACCTGCATCGTTGTTGATATATTACCTCAGGAGAAGCCACCTGCTCCCGCGGCACAACAAAAGAAGCCAGTAAAAGGAATGCTCAAGGCCATGTTTCGTAAAAAGTCTTCTGAATCATCTTCTACGGACAAAGAATACATGGAGCCAGATGTGGTAGTGGAGTTGTATGAGGAAGGCTCTGCTATGCTTTCAGAGAGATTAGAGACAAAATATCCACTCTGCAATATGTTCAAGTTGTTCATATGTGCAGTATGTCAAGTAGAAATAAAACCTGGAGAGGGTATTTCAGTACACGAGGGTGCATCAAACCCTCAAAACACGCGCCCATGGGATGGCCCTTTCCTTTGCTTTAGTTGTCAGGAGAAGAAAGAAGCCATGGAAGGAAAAAGATCATCAGATAGACTTAGCAGCGGAAGCGACGAATGA 1287 0.4421 MSTRNEQHQTVPLSVLLKRELMNEKIEKPEICHGQAGQSKKGEDLTLLKAECQRMVSDGVYTYSVYGLFDGHNGSAAAIYSKENLLNNVLSAIPPDLNGDEWLAALPRALVAGFVKTDKDFAQNGQKSGTTVTFVIIEGWVVTVASVGDSRCVLESSEGGIYYLSADHRLETNEEERVRITSSGGEVGRLNTGGGAEVGPLRCWPGGLCLSRSIGDMDIGEFVVPVPHVKQVKLSTAGGRLVICSDGVWDSLPAEVALDCCRGMSAEAAAPQIVKEALQAKGLRDDTTCIVVDILPQEKPPAPAAQQKKPVKGMLKAMFRKKSSESSSTDKEYMEPDVVVELYEEGSAMLSERLETKYPLCNMFKLFICAVCQVEIKPGEGISVHEGASNPQNTRPWDGPFLCFSCQEKKEAMEGKRSSDRLSSGSDE 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g05636 428 Gene3D - 32 300 IPR036457 -
Vivi4g05636 428 SMART PP2C_4 22 292 IPR001932 -
Vivi4g05636 428 CDD PP2Cc 37 294 IPR001932 -
Vivi4g05636 428 PANTHER PROTEIN PHOSPHATASE 38 293 IPR015655 GO:0004722|GO:0006470
Vivi4g05636 428 FunFam probable protein phosphatase 2C 12 33 300 - -
Vivi4g05636 428 ProSiteProfiles PPM-type phosphatase domain profile. 42 294 IPR001932 -
Vivi4g05636 428 SUPERFAMILY PP2C-like 35 294 IPR036457 -
Vivi4g05636 428 Pfam Protein phosphatase 2C 58 282 IPR001932 -
Vivi4g05636 428 SMART PP2C_SIG_2 47 294 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g05636 Vivi-Chr4 192302561 192308089 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g05636 1 427 PP2C-type Phosphatase Gene Family AT1G47380 75.524 0.0 677
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi4g05636 4 192302561 192308089 Vivi4g05636 4 192302561 192308089 ECH
Vivi4g05636 4 192302561 192308089 Vivi3g01939 3 32085981 32091352 PCT