Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g05600 ATGGCTTTCCTTCAAGACCAGTTTCAACGCCACTACCAACCCCAACCCCAACCACAACCACAACCACAAACCAATTCTTTCAGAAATTTAAGAACAATTGATGGTCAGATGTCGCAGCAGATGGCGTTTTACAACCCAACTGATTTGCAAGATCAGTCTCAGCATCCGCCTTACATTCCTCCATTTCATGTTGTTGGCTTTGCTCCGGGTCCAGTTCTTCCTGCTGATGGAAGTGACGGTGGTGTTGATTTGCATTGGAATTTCGGATTGGAACCGGAGCGGAAGAGACTAAAAGAACAGGATTTTTTGGAGAACAATTCACAGATATCTTCTGTGGATTTTCTGCAACCTCGATCTGTGTCAACGGGATTGGGATTGTCGCTTGATAATACTCGTCTAGCTTCAACCGGAGACTCGGCTTTATTGTCGCTTATTGGGGATGATATTGATCGTGAGTTGCAGCAGCAGGATTTAGAGATGGATAGATTTCTCAAACTGCAGGGTGAGCAATTGCGGCAAACCGTTTTAGAAAAAGTTCAAGCAACACAACTTCAGTGTGTTTCAATCATCGAAGACAAGGTCATTCAGAAGCTTCGAGAGAAAGACACCGAGGTAGAAAACATCAACAAACGAAACATGGAGCTTGAAGACCAAATGGACCAATTAAGTGCAGAAGCGGGAGCTTGGCAACAACGTGCCAGATATAACGAAAACATGATAGCTGCTCTCAAGTTCAACCTTCAGCAAGCTTATCTCCAAAGTAGAGACAGTAAAGAAGGATGCGGCGACAGCGAAGTAGACGATACAGCTTCTTGCTGTAACGGACGTTCTCTTGATTTTCATCTCCTCTCGAATGAAAACTCCAATATGAAAGAAGCGATGAAATGTAAGGCATGCAGAGTGAATGAAGTGACGATGGTGTTGTTACCGTGTAAGCATCTTTGCCTCTGTAAAGATTGTGAAAGTAAGCTTAGTTTTTGTCCGCTATGTCAATCCTCAAAATTCATAGGCATGGAGGTCTACATGTAA 1029 0.4354 MAFLQDQFQRHYQPQPQPQPQPQTNSFRNLRTIDGQMSQQMAFYNPTDLQDQSQHPPYIPPFHVVGFAPGPVLPADGSDGGVDLHWNFGLEPERKRLKEQDFLENNSQISSVDFLQPRSVSTGLGLSLDNTRLASTGDSALLSLIGDDIDRELQQQDLEMDRFLKLQGEQLRQTVLEKVQATQLQCVSIIEDKVIQKLREKDTEVENINKRNMELEDQMDQLSAEAGAWQQRARYNENMIAALKFNLQQAYLQSRDSKEGCGDSEVDDTASCCNGRSLDFHLLSNENSNMKEAMKCKACRVNEVTMVLLPCKHLCLCKDCESKLSFCPLCQSSKFIGMEVYM 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g05600 342 PIRSF SBP1_RNase_bind 5 342 IPR017066 -
Vivi4g05600 342 Pfam Zinc finger, C3HC4 type (RING finger) 294 332 - -
Vivi4g05600 342 FunFam probable BOI-related E3 ubiquitin-protein ligase 2 278 342 - -
Vivi4g05600 342 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 282 342 IPR013083 -
Vivi4g05600 342 MobiDBLite consensus disorder prediction 1 27 - -
Vivi4g05600 342 ProSiteProfiles Zinc finger RING-type profile. 296 331 IPR001841 -
Vivi4g05600 342 CDD mRING-HC-C3HC5_CGRF1-like 296 330 - -
Vivi4g05600 342 PANTHER SBP (S-RIBONUCLEASE BINDING PROTEIN) FAMILY PROTEIN 94 340 IPR017066 -
Vivi4g05600 342 Coils Coil 198 232 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g05600 Vivi-Chr4 191825938 191828402 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g05600 296 332 Miscellaneous Gene Families AT4G39050 45.946 5.82e-07 49.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi4g05600 4 191825938 191828402 Vivi4g05600 4 191825938 191828402 ECH