Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g05599 ATGGCTAATTCTTCTGATGATTTGCACCAAACTCTCCCATCACCTTTGGTTCCTCCTGATTCCCAAGATTTCTCCAATTTATTCAACCAACTCATGGATCCTTCTTCTTCTTCTCCCTCTTTCAATTTCTCTCATCCTTTTCCCAACTCTTCCACAACCATCCCTTACCCTCCTAATCATTTCACTTCTTCATCATCACCTCAGAATGATGAAGCTTCAGAGTTGCCATCATCAAAAGCTACCCTACCATCACGTTCTTCTTCAAAGAGAAGCAGAGCTGCAGAGTTTCATAATTTGTCTGAAAAGAGAAGGAGGAGTAAGATTAATGAGAAATTGAAAGCTTTGCAGAATTTAATTCCAAATTCTAACAAGACAGACAAAGCTTCAATGCTTGATGAGGCTATAGAATATTTAAAGCAGCTTCAACTTCAAGTGCAAATGTTAATGATAAGAAACGGTTATAGTTTGCATCCAGTGTCTTTACCAGGAGGATCGCGACCAACGACGTTTCCACAAACTGATTTGTTGAATCTTGATGATAGTAATATTGGATTTCACAATTCTATCAATGCAATCGCCTCTTCTGCAAACGATGAATGTTTTGCGCGGCCTAGTTTTAGTTTTCCAGAACAACGCGACATATCAAATCAAACTGTCGCGGCAAATATTACTAATTTCGATGCCTCATCAAGTTTTCAACCCTCGATTAAGGGTGTTTTCTGCAACAACATGCCACAGCTGATTTTGGATTCAACAAGGACTGGAAAAACTCCTGATATGTCTTAA 786 0.3893 MANSSDDLHQTLPSPLVPPDSQDFSNLFNQLMDPSSSSPSFNFSHPFPNSSTTIPYPPNHFTSSSSPQNDEASELPSSKATLPSRSSSKRSRAAEFHNLSEKRRRSKINEKLKALQNLIPNSNKTDKASMLDEAIEYLKQLQLQVQMLMIRNGYSLHPVSLPGGSRPTTFPQTDLLNLDDSNIGFHNSINAIASSANDECFARPSFSFPEQRDISNQTVAANITNFDASSSFQPSIKGVFCNNMPQLILDSTRTGKTPDMS 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g05599 261 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 92 141 IPR011598 GO:0046983
Vivi4g05599 261 Pfam Helix-loop-helix DNA-binding domain 96 142 IPR011598 GO:0046983
Vivi4g05599 261 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 20 235 IPR031066 -
Vivi4g05599 261 FunFam Basic helix-loop-helix transcription factor 87 150 - -
Vivi4g05599 261 SMART finulus 98 147 IPR011598 GO:0046983
Vivi4g05599 261 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 89 151 IPR036638 GO:0046983
Vivi4g05599 261 Gene3D - 87 150 IPR036638 GO:0046983
Vivi4g05599 261 MobiDBLite consensus disorder prediction 90 105 - -
Vivi4g05599 261 CDD bHLH_AtPIF_like 93 154 IPR047265 -
Vivi4g05599 261 MobiDBLite consensus disorder prediction 1 105 - -
Vivi4g05599 261 MobiDBLite consensus disorder prediction 1 89 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g05599 Vivi-Chr4 191817847 191820055 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g05599 92 163 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G36930 86.111 7.96e-37 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vivi4g05599 HLH 1.2e-14 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi4g05599 4 191817847 191820055 Vivi4g05599 4 191817847 191820055 ECH