Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g05597 ATGCAAGGGCAGAGAGGCACAATTGGTTCCTCGTCTGAAACCTTCGAGTTTGATTGTGGGTCGACATCAAGTAATGCTGCAGTTGATCAGCATATTTTCTGGAATAATATGCGGACTCCGGCTGAGAATCGGATACCTGAATTTATACTTTCTCCAAGTGATATGAACCCGTCTCACGGGAATGTTGTAAACCATGAATGGCAGAACTTGAGTGGTTGGAGCTTAGGCGAGCCGAGTTCCAGTAATACACAAAACGAAGTTAACAACAATGAGCTGAAGAGGGAATTGCGGTTATCACCTCCGATAAACAGTGGTGCTGTAGTTGGTCCAAGACTCGAAGAGAGGCACTTCGAACCATCCAATACCTTTTCGTTGGATAATGTCAATGCAGGTCCTATGTATATGTGTGGCTCTAATCCTCATTTGGTGCCGCAAAATCTCAACTTAAATGCTGCTTTAGCAGATAATGTCGGAGATAATAGCTATCATGTGGAAGTCGGTCATTCTAACGCGGCCAAATCGAGTGGTCAGCTGAACGAGCACATTCCACCGACTATTGGTTCTGGTTCTTTTTTGCTTCCTTCTGGTGGACGCAACAGCGTTTTTGTCGGGGAGACTGATGGTAGGCAAGGTTGTTCTCTAGACCCAAACCGTCGTGTATCTTGTAAAAGAAAGGCGGGTGAAGGAATTGGCGGACAATCTTCTGACGGTGGAAGTTCTAGCTATAGTCAGCATACCGATGGCAGTGCTTGGAATACTCTTCCTACTCAGGATTATGCAATGAACAACTTCAACCGATCATCACCGGCAGAACAGGTGAATGCAAGACTTGGCCTAAGTGTTGGAGACGGATCTTCTGAAACAATACCAGAGTCAACTGTTGCTGGAAGCTCAGAAGGCTTCCACAGAAATTTTCGCTTGAGGGTAAACCCTGCAAGCCAACAAATTTCTCTCCCTCAACCCACATTCTCAAATGGGAGTGTGATCAGGAATTCTACTGTTCCTTCATCTTCTCCAATGTTGCCGAGGTTTCACCCTATTGATAATTCTCTGGACTTGAGGTCAGTACCACCGGTAGATGCCCTGCTTCCTCAAAGCCATCCGCATTTAAGTCATGTTCCTGCTTTACCGAGGAGTTTACAATCCGTCAGGTGGAATGGTGGTTCTAGCTCAACCAATAACCATTCGTCAAGTTCAGTTTTGGATCATCCGGTGTTTGTACCTGCAAATTTAAGAAATGCTGTTCGAAATGCATCTCGACCTTCGAGTACTGCAAATTTAAGTGTTCCTGGAAATGTTGCTTCCTCATCACGGACTGCTCCAAATCCTCCTGCTTTGAATCCGTCATCTGCCTCGGCGTGGGTTTCTCGTCCCAATCCTCAGCAGTATCCACGCAGGTTATCTGAATATGTTCGCCGGTCCTTGTTTACTCCTGGTTCTGAAGGTGGAAGTTCAAGCAATACCTATTCTACATTGCGCGGTCCTTCTACTCCATCAGAATCAAGAGGACCACCATCGGCGACGAACCCTGGATCATCTCCATGGTTGGAGAGGTCAGCTGATACTGAATTTGGAATTCCCTATTCCTTACGATCCTTGGCTGCTTCTTCTGGTGAAGGAAGTAGTAGACTTGTATCTGAGCTGCGCAATGTGTTGGGACTTATGCGTAGGGGTGGGAACCTGCGGTTTGAGGATGTTATGATTCTTGACCATTCAATGTTTTCTGGAATTGCTGATATTCATGACCGACACAGGGATATGCGGCTTGATGTCGATAACATGTCTTATGAGGAGTTACTGGCCCTTGAAGAACGCATTGGTAACGTGAGTACTGGATTGAACGAGGAAACCATCATGAGGCATTTGAAACAGAAGAAATATTCAGTTGATGAATCAGGTTCTCAGAGTGATGCAGAACCCTGCTCTGTTTGTCAGGAGGAGTATAAAAATGAAGATGATATCGGATCGTTGGACTGCGGGCATGATTACCATATCGACTGTATCAAACAGTGGCTAATGCACAAGAATCTGTGTCCCATTTGTAAGACAACAGGCTTAGCAACATGA 2067 0.4562 MQGQRGTIGSSSETFEFDCGSTSSNAAVDQHIFWNNMRTPAENRIPEFILSPSDMNPSHGNVVNHEWQNLSGWSLGEPSSSNTQNEVNNNELKRELRLSPPINSGAVVGPRLEERHFEPSNTFSLDNVNAGPMYMCGSNPHLVPQNLNLNAALADNVGDNSYHVEVGHSNAAKSSGQLNEHIPPTIGSGSFLLPSGGRNSVFVGETDGRQGCSLDPNRRVSCKRKAGEGIGGQSSDGGSSSYSQHTDGSAWNTLPTQDYAMNNFNRSSPAEQVNARLGLSVGDGSSETIPESTVAGSSEGFHRNFRLRVNPASQQISLPQPTFSNGSVIRNSTVPSSSPMLPRFHPIDNSLDLRSVPPVDALLPQSHPHLSHVPALPRSLQSVRWNGGSSSTNNHSSSSVLDHPVFVPANLRNAVRNASRPSSTANLSVPGNVASSSRTAPNPPALNPSSASAWVSRPNPQQYPRRLSEYVRRSLFTPGSEGGSSSNTYSTLRGPSTPSESRGPPSATNPGSSPWLERSADTEFGIPYSLRSLAASSGEGSSRLVSELRNVLGLMRRGGNLRFEDVMILDHSMFSGIADIHDRHRDMRLDVDNMSYEELLALEERIGNVSTGLNEETIMRHLKQKKYSVDESGSQSDAEPCSVCQEEYKNEDDIGSLDCGHDYHIDCIKQWLMHKNLCPICKTTGLAT 688
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g05597 688 Pfam Ring finger domain 641 682 IPR001841 -
Vivi4g05597 688 MobiDBLite consensus disorder prediction 417 518 - -
Vivi4g05597 688 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 218 686 IPR045191 GO:0061630
Vivi4g05597 688 MobiDBLite consensus disorder prediction 224 254 - -
Vivi4g05597 688 MobiDBLite consensus disorder prediction 478 516 - -
Vivi4g05597 688 MobiDBLite consensus disorder prediction 233 254 - -
Vivi4g05597 688 MobiDBLite consensus disorder prediction 1 21 - -
Vivi4g05597 688 SUPERFAMILY RING/U-box 640 684 - -
Vivi4g05597 688 MobiDBLite consensus disorder prediction 417 463 - -
Vivi4g05597 688 SMART ring_2 641 681 IPR001841 -
Vivi4g05597 688 FunFam E3 ubiquitin-protein ligase MBR2 608 686 - -
Vivi4g05597 688 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 604 685 IPR013083 -
Vivi4g05597 688 ProSiteProfiles Zinc finger RING-type profile. 641 682 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g05597 Vivi-Chr4 191784350 191790073 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g05597 1 688 C3H Transcription Factor Family AT2G15530 31.167 3.50e-68 235
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi4g05597 4 191784350 191790073 Vivi4g05597 4 191784350 191790073 ECH
Vivi4g05597 4 191784350 191790073 Vivi4g05597 4 191784350 191790073 PCT