Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g05594 ATGGCGCAGATTCAGGTTCAGCATCAAACTCCGGTCGCCGTTCCGGCACCGTCGAACGGCGGCGTCATTGCCGCTCCCAACGCGAACCAGTTCGTTACGACGTCGTTGTACGTCGGTGACCTAGAACTGAATGTTAGCGATTCGCAACTTTACGAACTGTTTAATCAGGTTGGACAAGTTGTTTCTGTTAGGGTTTGTAGGGATTTGGCTACTCGTCGTTCGCTCGGTTATGGTTATGTTAATTTCAACAACCCTCAGGACGCGGCTAGGGCTTTGGATGTGTTGAATTTTACTCCACTGAACAACAAATCTATTAGGGTTATGTATTCTCACCGGGATCCTAGTATTCGGAAGAGCGGCACTGCTAATATTTTTATCAAGAATTTGGACAAGACAATTGATCACAAAGCTTTGCATGATACTTTTTCTACTTTCGGACATATTCTGTCTTGCAAAATAGCTACTGATGGTACTGGCCAGTCTAAAGGCTATGGTTTCGTCCAATTTGAGAACGCTGAATCTGCTCAGGGTGCAATTGATAAGTTAAATGGAATGCTAATCAATGATAAGCAGGTGTATGTTGGTCATTTCCTTCGTAAGCAGGATAGAGATAATGTTCTTAGTAAGACAAGATTTAATAATGTCTATGTCAAGAACCTATCAGAGTCATTTTCGGAAGAAGATTTGAGGGTTACATTTGGAGAATATGGTACAATTACTAGTGCTGTTTTGATGAGAGATGCAGATGGTAGGTCCAAGTGTTTTGGTTTTGTCAATTTTGAAAGTCCAGATGATGCTGCTAAAGCCGTTGAGGCTTTGAATGGGAAGAAAGTTGAAGACAAGGAGTGGTATGTGGGAAAAGCCCAGAAAAAATCTGAACGGGAGCTTGAGCTGAAAGGACGATTTGAACAGACTGTCAAAGAATCTGTAGACAAATATCAGGGTGTGAACTTGTATCTTAAGAACTTGGATGATTCTATTAGTGATGAAAAACTCAGAGAAATTTTCTCTGAGTTTGGCACAATAACCTCATACAAGATTATGCGAGACCCAAATGGAGTTAGCAGAGGTTCCGGATTTGTTGCATTTTCAACCCCGGAGGAAGCATCAAGAGCTCTTGGAGAAATGAACGGTAAAATGATTGTTACCAAACCTCTTTATGTTGCTATTGCACAGAGAAAGGAAGATAGAAGAGCAAGGTTGCAGGCACAATTTTCACAAATGAGGCCGGTTGCAATTACTCCTTCTGTTGCACCCCGAATGCCACTCTACCCTCCTGGTGCTCCTGGTATAGGACAACAGTTTATGTATGGTCAAGGACCTCCAGCCATGATGCCCCCACAAGCTGGATTTGGATATCAGCAGCAGCTTGTTCCTGGGATGAGACCTGGCGGTGGTCCTATGCCAAATTACTTTGTTCCTATGGTTCAGCAGGGACAAGGTCAGCGCCCTGGTGGACGACGTGGAGGTGGTCCTGTTCAACAATCCCAGCAGCCTGTGCCAATGATGCAGCAACAGATGCTTCCAAGGCAACGTGTTTATCGCTACCCTTCTGGACGCAACAACATTCAAGATGCCCCTGTTCAAAACATAGCTGGAGGAATGATGTCCTATGACATGGGAGGTCTTCCACTTCGCGATGTTGCACCACCCATGCCAATTCATGCTTTGGCTACGGCTCTTGCAAATGCCCCCCCTGAACAGCAGAGGACGATGCTTGGGGAGGCCTTGTATCCGCTAGTAGATCAGCTGGAACATGATTCAGCAGCCAAGGTTACTGGTATGCTTTTAGAGATGGACCAGCCTGAAGTATTGCATCTGATTGAATCCCCGGATGCTCTCAAGGCCAAAGTTGCCGAAGCCATGGATGTACTGAGAAATGTTGCTCAGCAAGGCAACAGCCCTGCGGAACAGCTAGCTTCACTTTCGCTCAACGATAATCTTGTATCTTAG 1953 0.4526 MAQIQVQHQTPVAVPAPSNGGVIAAPNANQFVTTSLYVGDLELNVSDSQLYELFNQVGQVVSVRVCRDLATRRSLGYGYVNFNNPQDAARALDVLNFTPLNNKSIRVMYSHRDPSIRKSGTANIFIKNLDKTIDHKALHDTFSTFGHILSCKIATDGTGQSKGYGFVQFENAESAQGAIDKLNGMLINDKQVYVGHFLRKQDRDNVLSKTRFNNVYVKNLSESFSEEDLRVTFGEYGTITSAVLMRDADGRSKCFGFVNFESPDDAAKAVEALNGKKVEDKEWYVGKAQKKSERELELKGRFEQTVKESVDKYQGVNLYLKNLDDSISDEKLREIFSEFGTITSYKIMRDPNGVSRGSGFVAFSTPEEASRALGEMNGKMIVTKPLYVAIAQRKEDRRARLQAQFSQMRPVAITPSVAPRMPLYPPGAPGIGQQFMYGQGPPAMMPPQAGFGYQQQLVPGMRPGGGPMPNYFVPMVQQGQGQRPGGRRGGGPVQQSQQPVPMMQQQMLPRQRVYRYPSGRNNIQDAPVQNIAGGMMSYDMGGLPLRDVAPPMPIHALATALANAPPEQQRTMLGEALYPLVDQLEHDSAAKVTGMLLEMDQPEVLHLIESPDALKAKVAEAMDVLRNVAQQGNSPAEQLASLSLNDNLVS 650
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g05594 650 Pfam Poly-adenylate binding protein, unique domain 561 625 IPR002004 GO:0003723
Vivi4g05594 650 Gene3D - 203 301 IPR012677 -
Vivi4g05594 650 Gene3D - 1 116 IPR012677 -
Vivi4g05594 650 SMART poly_2 565 628 IPR002004 GO:0003723
Vivi4g05594 650 CDD RRM2_I_PABPs 120 196 IPR045305 -
Vivi4g05594 650 Gene3D - 302 402 IPR012677 -
Vivi4g05594 650 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 122 199 IPR000504 GO:0003723
Vivi4g05594 650 SUPERFAMILY RNA-binding domain, RBD 34 203 IPR035979 GO:0003676
Vivi4g05594 650 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 553 630 IPR002004 GO:0003723
Vivi4g05594 650 CDD RRM3_I_PABPs 212 291 - -
Vivi4g05594 650 Gene3D - 550 631 - -
Vivi4g05594 650 FunFam Polyadenylate-binding protein 549 631 - -
Vivi4g05594 650 FunFam Polyadenylate-binding protein 299 404 - -
Vivi4g05594 650 FunFam Polyadenylate-binding protein 203 298 - -
Vivi4g05594 650 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 213 290 IPR000504 GO:0003723
Vivi4g05594 650 SUPERFAMILY RNA-binding domain, RBD 213 397 IPR035979 GO:0003676
Vivi4g05594 650 PANTHER RNA BINDING PROTEIN 33 96 - -
Vivi4g05594 650 CDD RRM1_I_PABPs 35 114 IPR034364 -
Vivi4g05594 650 Gene3D - 117 202 IPR012677 -
Vivi4g05594 650 FunFam Polyadenylate-binding protein 21 122 - -
Vivi4g05594 650 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 215 283 IPR000504 GO:0003723
Vivi4g05594 650 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 124 192 IPR000504 GO:0003723
Vivi4g05594 650 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 318 384 IPR000504 GO:0003723
Vivi4g05594 650 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 36 106 IPR000504 GO:0003723
Vivi4g05594 650 MobiDBLite consensus disorder prediction 478 503 - -
Vivi4g05594 650 SUPERFAMILY PABC (PABP) domain 497 635 IPR036053 GO:0003723
Vivi4g05594 650 NCBIfam polyadenylate binding protein, human types 1, 2, 3, 4 family 35 626 IPR006515 GO:0003723
Vivi4g05594 650 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 34 112 IPR000504 GO:0003723
Vivi4g05594 650 SMART rrm1_1 317 389 IPR000504 GO:0003723
Vivi4g05594 650 SMART rrm1_1 123 195 IPR000504 GO:0003723
Vivi4g05594 650 SMART rrm1_1 35 108 IPR000504 GO:0003723
Vivi4g05594 650 SMART rrm1_1 214 286 IPR000504 GO:0003723
Vivi4g05594 650 SMART rrm2_1 317 389 IPR003954 GO:0003676
Vivi4g05594 650 SMART rrm2_1 35 108 IPR003954 GO:0003676
Vivi4g05594 650 SMART rrm2_1 123 195 IPR003954 GO:0003676
Vivi4g05594 650 SMART rrm2_1 214 286 IPR003954 GO:0003676
Vivi4g05594 650 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 316 393 IPR000504 GO:0003723
Vivi4g05594 650 FunFam Polyadenylate-binding protein 123 196 - -
Vivi4g05594 650 CDD RRM4_I_PABPs 315 393 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g05594 Vivi-Chr4 191675771 191681032 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g05594 1 645 Eukaryotic Initiation Factors Gene Family AT4G34110 67.791 0.0 864
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi4g05594 4 191675771 191681032 Vivi4g05594 4 191675771 191681032 ECH