Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g05593 ATGAAGGTTCATCAGTTCACACGTGGATTCTGGGAACATGAACCTTCCCTCTCTCTTGGTTGCAAACGCTTACGTCCTCTTGCACCAAAAGTTTCTAATCACACCGATAATATTACTACTACCAACTCACCTTCTCTTTCTTTTGATCTCAAGAGTTTCATTAGACCTGAAACTGATAACAAGAAAGATCCACCTTCACCACAAAGCCAGGTTGAAACGCATGTTCCAGGAGGAACAAGGTGGAATCCGACACAAGAACAAATAGGAATATTGGAGATGTTATACAGAGGTGGAATGAGAACACCAAATGCACAACAAATAGAACAGATAACTGTTCAACTTAGCAAGTACGGTAAAATTGAAGGGAAAAATGTGTTTTATTGGTTCCAAAACCACAAAGCACGCGAGAGACAAAAGCAGAAACGTAACAGTCTTGGTCTTCCTCATAGTCCTCGTACTCCCACAACCACACTAGTGTCTTCTACTTTTAGTACTATTACAACTTTGGACACACCTAAAAGGGGGGAAGTAATGAAAAGAAATCAAGAAGATAGTCCATTGAAGAAGAGTAGGAGTTGGCCATTTGAGTATTTAGAAGAGCAAAATTGGTCATCAATATGCAAAGAGGAAGAACATAAAACCCTAGAGCTTTTTCCATTACACCCTGAAGGGAGATGA 678 0.3997 MKVHQFTRGFWEHEPSLSLGCKRLRPLAPKVSNHTDNITTTNSPSLSFDLKSFIRPETDNKKDPPSPQSQVETHVPGGTRWNPTQEQIGILEMLYRGGMRTPNAQQIEQITVQLSKYGKIEGKNVFYWFQNHKARERQKQKRNSLGLPHSPRTPTTTLVSSTFSTITTLDTPKRGEVMKRNQEDSPLKKSRSWPFEYLEEQNWSSICKEEEHKTLELFPLHPEGR 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g05593 225 Gene3D - 78 145 - -
Vivi4g05593 225 FunFam WUSCHEL-related homeobox 4 78 145 - -
Vivi4g05593 225 MobiDBLite consensus disorder prediction 63 83 - -
Vivi4g05593 225 SMART HOX_1 76 143 IPR001356 GO:0003677
Vivi4g05593 225 MobiDBLite consensus disorder prediction 173 191 - -
Vivi4g05593 225 SUPERFAMILY Homeodomain-like 78 145 IPR009057 -
Vivi4g05593 225 Pfam Homeodomain 79 138 IPR001356 GO:0003677
Vivi4g05593 225 MobiDBLite consensus disorder prediction 137 191 - -
Vivi4g05593 225 CDD homeodomain 79 140 IPR001356 GO:0003677
Vivi4g05593 225 MobiDBLite consensus disorder prediction 144 171 - -
Vivi4g05593 225 ProSiteProfiles 'Homeobox' domain profile. 84 139 IPR001356 GO:0003677
Vivi4g05593 225 PANTHER WUSCHEL-RELATED HOMEOBOX 4 1 225 IPR044186 GO:0003700|GO:0010067|GO:0010087|GO:0051301
Vivi4g05593 225 MobiDBLite consensus disorder prediction 55 83 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g05593 Vivi-Chr4 191640484 191642075 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g05593 1 145 Wox Gene Family AT1G46480 66.667 5.73e-64 195
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Vivi4g05593 Homeodomain 1.3e-18 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi4g05593 4 191640484 191642075 Vivi4g05593 4 191640484 191642075 ECH