Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g05591 ATGAATTCAACAACCAATACTACTTCTATAGATAGTAACAACAACAGCAACAACAATAAGAATAAGAGTATGAGAAAAGAGAAGAAAGAGATGAAACCATATAGAGGAATTAGGATGAGAAAGTGGGGAAAATGGGTGGCAGAGATTAGAGAACCAAACAAGAGATCAAGAATTTGGTTAGGTTCTTATATAACTCCTATTGCCGCTGCTCGTGCTTATGATACTGCTGTGTTTTATCTTCGAGGTCCGACCGCGAACCTTAATTTTCCAGAATTGTTGTTTAAGGATCGAGAAAATGAAGAAGAAGAAAGATACGAGAAGAATATGTCGGCGGATTTGATAAGGAAGAAAGCTACACAAGTTGGTGCTAGAGTTGATGCTTTTGAAACTTCTTTGAATAATCATGTTCATGTTCATGTTCACTCCAATACAAGTTGTAGTCTTAAACCTGACTTGAATGAGTTTCCAAAACCTGAAGATTATTAA 486 0.3601 MNSTTNTTSIDSNNNSNNNKNKSMRKEKKEMKPYRGIRMRKWGKWVAEIREPNKRSRIWLGSYITPIAAARAYDTAVFYLRGPTANLNFPELLFKDRENEEEERYEKNMSADLIRKKATQVGARVDAFETSLNNHVHVHVHSNTSCSLKPDLNEFPKPEDY 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g05591 161 CDD AP2 34 92 IPR001471 GO:0003700|GO:0006355
Vivi4g05591 161 Pfam AP2 domain 34 82 IPR001471 GO:0003700|GO:0006355
Vivi4g05591 161 SUPERFAMILY DNA-binding domain 33 91 IPR016177 GO:0003677
Vivi4g05591 161 MobiDBLite consensus disorder prediction 1 31 - -
Vivi4g05591 161 MobiDBLite consensus disorder prediction 1 20 - -
Vivi4g05591 161 Gene3D AP2/ERF domain 33 91 IPR036955 GO:0003700|GO:0006355
Vivi4g05591 161 ProSiteProfiles AP2/ERF domain profile. 33 90 IPR001471 GO:0003700|GO:0006355
Vivi4g05591 161 FunFam Ethylene-responsive transcription factor 2 32 91 - -
Vivi4g05591 161 SMART rav1_2 33 96 IPR001471 GO:0003700|GO:0006355
Vivi4g05591 161 PRINTS Ethylene responsive element binding protein signature 34 45 IPR001471 GO:0003700|GO:0006355
Vivi4g05591 161 PRINTS Ethylene responsive element binding protein signature 72 92 IPR001471 GO:0003700|GO:0006355
Vivi4g05591 161 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 12 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g05591 Vivi-Chr4 191456507 191457598 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g05591 28 137 AP2-EREBP Transcription Factor Family AT5G67190 69.091 2.02e-49 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Vivi4g05591 AP2 3.6e-11 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi4g05591 4 191456507 191457598 Vivi4g05591 4 191456507 191457598 ECH