Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g05589 ATGCATTCTCTGTTTTTCCACAACGCAAACGCAACAACACTACACACTCTCCACTTTCCCTTCAACTTATCTTCTTCACTTCTTTTCCCAAACAATCACAATCTATCCTCAAAACCCCGTTTCCAACGCTCCATCAAAACCAACGCCAAACAAGTCACTAACAAAAAGGTTATAATCCTATGGGACCTCGACAACAAACCTCCACGTGGACCTCCATACGCCGCCGCACTCTCTCTCAAAACCCTCGCCGAACGCTTCGCCGACGACGTTTCAATCTCCGCTCACACCAAACGACACTCCTTCTTCAACCTCCCTCAATGGAACCCCGACCAAAACCCTAACCCTAATTGCATACTCTGCCATGTATGCGGTCACGAATGCAAATCCATTTCCGATCTCAAAATCCATTTCAGGAAAATTCACCTATACCAGCGCGAGAAGTTGCGTAAAAAATTGGGATCGATTAAGTTGAGTCGGTCGAAGGTCGGGTTTATTCGGAGGATACATACGTATAATGAAGCTGCGGGGAATGATGTTGCGCCTAGGGTTGAATTTGGATTGGGTTCGGAGTTGCGGCGGGCGGGGGTTTTTGTTAAAGTTGTGAAGTATGGTGAGAAGGGGAATGCGGCTGATTTGTGGTTGAAGAGGGAGATGATGAGTGGGGAGATTGGTTGGTTGGTTTTGGTTTCGGATGATAAGGAATTTTCGGAGATGTTGAGGAAGGTTAGGGAGGTGGATTTGAAGACAGTTGTTGTTGGGGATTATTGGGATAGAGATTTGGGGAAGAATGCTGATTTGTGGCTTCCTTGGATTGTTGTTGAGAATGGGAATGTTGAGGGAATGGATGTAATGGGAAGAGGAACAATAACAGAGGATTTGGATGATGAATTGGTATAG 897 0.4582 MHSLFFHNANATTLHTLHFPFNLSSSLLFPNNHNLSSKPRFQRSIKTNAKQVTNKKVIILWDLDNKPPRGPPYAAALSLKTLAERFADDVSISAHTKRHSFFNLPQWNPDQNPNPNCILCHVCGHECKSISDLKIHFRKIHLYQREKLRKKLGSIKLSRSKVGFIRRIHTYNEAAGNDVAPRVEFGLGSELRRAGVFVKVVKYGEKGNAADLWLKREMMSGEIGWLVLVSDDKEFSEMLRKVREVDLKTVVVGDYWDRDLGKNADLWLPWIVVENGNVEGMDVMGRGTITEDLDDELV 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g05589 298 ProSitePatterns Zinc finger C2H2 type domain signature. 120 141 IPR013087 -
Vivi4g05589 298 PANTHER C2H2-TYPE DOMAIN-CONTAINING PROTEIN 44 279 - -
Vivi4g05589 298 ProSiteProfiles Zinc finger C2H2 type domain profile. 118 146 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g05589 Vivi-Chr4 191434285 191435181 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g05589 54 284 C2H2 Transcription Factor Family AT5G52010 44.841 2.57e-64 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vivi4g05589 None None None
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi4g05589 4 191434285 191435181 Vivi4g05589 4 191434285 191435181 ECH