Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g05573 ATGGGACAAGCAGCTTCCACCGCCGCCGTCGCCAACCGCCGGGAAAGGAACACCAATACAGCGAAAACCAGTAGATCCACCTCCTTGGTTTCTCCGATGAACGCTACCGAAGAAGACGACGATGTTATAGATCCGGTTGACCGTGGAATCTCCGATTATATATCAGATCTACCTGACGAGTGTTTAGCGATTGTGTTTCAGTCGTTGAGCCCCGGTGACCGGAATCAGTGCTCACTCGTTTGCCGGCGGTGGTTGGTTGTCGAAGGACAGAGTCGGCAGCGGTTGTCGTTGAGCGCGAAACTGGATCTGCTTCCGGTGATTCCGTCTCTCTTCAATCGGTTCGATTCGGTGACGAAACTCGCTCTGAAATGCGATCGTAGATCTGAGAGTATACGAGATGAAGCTCTTGTGATAATCTCGGAGCGTTGCCCTAATCTCACGCGCCTTAAGCTCCGCGCGTGTAGGGAACTAACCGATGTTGGAATGGAAACTTTTGCGAAGAACTGTAGAGGATTGAAGAAACTATCGTGTGGATCTTGTACTTTTGGATCTAGAGGTATGAACGCGGTGCTGGATAATTGCGCTGCGCTCGAGGAACTGTCGGTGAAGCGGCTTCGGGGGATTGCGGAGACTGCGGTGGCGGAGCCGATTGGACCGGGTGTAGCGGCAGCGTCGCTGAAGACGATTTGTTTGAAGGAGCTTTATAATGGACAGTGTTTTGGTTCGTTGATTTTAGGTGCGAAGAATCTGAAGACTTTGAAGCTTTTTCGATGCTCGGGTGATTGGGACACGCTTTTTACGCTTATGGCGGAGCGTGTTACGAGTATGATTGTTGATGTTCATTTCGAGAGGCTTCAGATTAGTGATATTGGGTTACAAGCTATATCACATTGTTCGAATTTGGAGATTTTGCATCTTGTTAAGACACCTGAGTGCACTGATTTGGGACTTGTTGCGATTGCGGAGCGATGTAAGTTGTTAAGGAAGCTTCATATTGATGGATGGAAAGCGAATCGGATTGGTGATGAAGGGTTAATAGCTGTTGCTAAGTTTTGCCCTAATTTACAAGAATTGGTGCTTATTGGTGTTAACCCTACAAAAGCAAGTTTGGAAATGTTGGCGTCTAATTGTCCGAATCTAGAGAGGTTGGCTTTGTGTTCAAGTGATACTGTTGGTGATCCTGAGATATCTTGCATTGCTGCAAAGTGTTTAGCTTTAAAGAAACTCTGCATTAAGGGCTGTCCGGTTTCGGATCATGGAATGGAAGCTTTGGCGAACGGGTGTCCCAATTTGGTGAAAGTGAAGGTTAAGAAATGTAAAGGCGTTACACCCGAGGGCGGAGATTGGTTGAGGCTCACTCGGGGATCAGTTGCTGTTAATTTGGATACTGTGGAAGCGGAACTTCAAGATGCTAGTGCTAGTGATGGTGGAGCACAAGACAATGTTATAGAGTTTCCTCCAATGCCCGTCTGCGCAGCCGCATCTACATCGGGAAATACTGCATCTAGAAGTACTGCTCGATCGGCTTCGTTCAAGCAAAGGTTAGGACTTTTATCTGGAAGGAAAATAGTGGCTAGTACTTTGAGAAGATGGTCAGGTGGTAGCACTAGTGCCCGCCATGGTTAG 1626 0.4772 MGQAASTAAVANRRERNTNTAKTSRSTSLVSPMNATEEDDDVIDPVDRGISDYISDLPDECLAIVFQSLSPGDRNQCSLVCRRWLVVEGQSRQRLSLSAKLDLLPVIPSLFNRFDSVTKLALKCDRRSESIRDEALVIISERCPNLTRLKLRACRELTDVGMETFAKNCRGLKKLSCGSCTFGSRGMNAVLDNCAALEELSVKRLRGIAETAVAEPIGPGVAAASLKTICLKELYNGQCFGSLILGAKNLKTLKLFRCSGDWDTLFTLMAERVTSMIVDVHFERLQISDIGLQAISHCSNLEILHLVKTPECTDLGLVAIAERCKLLRKLHIDGWKANRIGDEGLIAVAKFCPNLQELVLIGVNPTKASLEMLASNCPNLERLALCSSDTVGDPEISCIAAKCLALKKLCIKGCPVSDHGMEALANGCPNLVKVKVKKCKGVTPEGGDWLRLTRGSVAVNLDTVEAELQDASASDGGAQDNVIEFPPMPVCAAASTSGNTASRSTARSASFKQRLGLLSGRKIVASTLRRWSGGSTSARHG 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g05573 541 Pfam F-box domain 54 85 IPR001810 GO:0005515
Vivi4g05573 541 Pfam Leucine Rich repeat 143 166 IPR001611 GO:0005515
Vivi4g05573 541 Gene3D - 53 92 - -
Vivi4g05573 541 SUPERFAMILY RNI-like 104 464 - -
Vivi4g05573 541 MobiDBLite consensus disorder prediction 1 34 - -
Vivi4g05573 541 FunFam F-box protein SKIP2 89 471 - -
Vivi4g05573 541 SUPERFAMILY F-box domain 51 86 IPR036047 GO:0005515
Vivi4g05573 541 CDD F-box_AtTIR1-like 54 92 - -
Vivi4g05573 541 SMART LRR_CC_2 324 351 IPR006553 -
Vivi4g05573 541 SMART LRR_CC_2 377 402 IPR006553 -
Vivi4g05573 541 SMART LRR_CC_2 169 193 IPR006553 -
Vivi4g05573 541 SMART LRR_CC_2 298 323 IPR006553 -
Vivi4g05573 541 SMART LRR_CC_2 143 168 IPR006553 -
Vivi4g05573 541 SMART LRR_CC_2 403 427 IPR006553 -
Vivi4g05573 541 SMART LRR_CC_2 352 376 IPR006553 -
Vivi4g05573 541 SMART LRR_CC_2 428 455 IPR006553 -
Vivi4g05573 541 Gene3D Ribonuclease Inhibitor 93 473 IPR032675 -
Vivi4g05573 541 ProSiteProfiles F-box domain profile. 51 95 IPR001810 GO:0005515
Vivi4g05573 541 PANTHER UNCHARACTERIZED 55 463 - -
Vivi4g05573 541 MobiDBLite consensus disorder prediction 1 35 - -
Vivi4g05573 541 FunFam F-box/LRR-repeat protein 3 isoform X1 53 92 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g05573 Vivi-Chr4 191189668 191191731 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi4g05573 4 191189668 191191731 Vivi4g05573 4 191189668 191191731 ECH