Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g05566 ATGGCCGACCAAGATAACTCCACGCGCCGCCCTCAACGTGAAGCCAAGAAAAGAGCAGTAGCTGCACTATGCGAGCAACGAAAACGAAAGCGCGTTGCTCTTGGTGACATCACTAACGACGTCGTTTCAGAAACCGAGAGACTCGTTTCCGATACTCACAGTCACAGTCACCGGCAGAAGAAGAAGAGAAACACCGGTAACTCTCCGGTTCCGGAGAAACCGGAAGATCCTCAGTTGTGTGAACCCTATGTTTCTGATATTCACGACTACCTTCGTAATTTAGAGGTTGATCCTAGTAAAAGGCCTTTACCTGATTATATACAGAAAGTTCAGAGGGATATTAATGCGAATATGAGGGGTGTTCTTGTGGATTGGTTAGTTGAAGTTGCGGAAGAGTACAAGCTTGTTTCGGATACGCTTTATTTCTCTGTTTCGTACATAGATAGGTTTTTATCTTTGAATGATTTGAGTAGACAGAAGTTGCAATTGCTTGGGGTTTCTTCAATGTTGATTGCTTCAAAATATGAGGAGATTAAGCCACCGGAAGTGGAGGATTTTTGTTACATTACTGATAATACGTATTCTAAGGAAGAGGTTTTGAGTATGGAGGCTGAAATTTTGAAATCTTTGAAGTTTGAATTGGGTGGTCCTACGATAAAGACATTTCTAAGAAGATTCATCACTAAAGTTGGGCAAGAGGGTGTTGATGCCTCTGAGTTGCAGTTTGAGTTCCTTTGCAGTTATCTTGCTGAGCTCAGTTTGTTGGATTATAATTGTGTAAAGTTTTTGCCTTCTATGGTGGCTGCATCAGTTCTATTTCTAGCACGTTTCATGTTAAACCCAAAGACTCGACCTTGGAATTCAGCCATCTATCAATGCACCAGTTATAAACCTGCTGATTTGAAGGAATGTGTTCTAAACATACATGACTTGTATCTTGGTAGGAAAGGTGCCACTTTGCAAGCTGTGAGAGACAAATACAAACAACATAAGTTCAAATGCGTTGCAACAACACCCTCTCCACCAGAGATATCTCTTTCTTTCTTTGAATTTAGAGGGGCAGATACTTAG 1071 0.4136 MADQDNSTRRPQREAKKRAVAALCEQRKRKRVALGDITNDVVSETERLVSDTHSHSHRQKKKRNTGNSPVPEKPEDPQLCEPYVSDIHDYLRNLEVDPSKRPLPDYIQKVQRDINANMRGVLVDWLVEVAEEYKLVSDTLYFSVSYIDRFLSLNDLSRQKLQLLGVSSMLIASKYEEIKPPEVEDFCYITDNTYSKEEVLSMEAEILKSLKFELGGPTIKTFLRRFITKVGQEGVDASELQFEFLCSYLAELSLLDYNCVKFLPSMVAASVLFLARFMLNPKTRPWNSAIYQCTSYKPADLKECVLNIHDLYLGRKGATLQAVRDKYKQHKFKCVATTPSPPEISLSFFEFRGADT 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g05566 356 CDD CYCLIN_AtCycA-like_rpt2 217 332 - -
Vivi4g05566 356 PANTHER CYCLINS 56 335 IPR039361 -
Vivi4g05566 356 Pfam Cyclin, C-terminal domain 217 340 IPR004367 -
Vivi4g05566 356 SMART Cyclin_C_2 217 341 IPR004367 -
Vivi4g05566 356 MobiDBLite consensus disorder prediction 1 20 - -
Vivi4g05566 356 Pfam Cyclin, N-terminal domain 86 214 IPR006671 -
Vivi4g05566 356 CDD CYCLIN_AtCycA_like_rpt1 76 213 - -
Vivi4g05566 356 ProSitePatterns Cyclins signature. 119 150 IPR006671 -
Vivi4g05566 356 Gene3D - 86 337 - -
Vivi4g05566 356 SMART cyclin_7 221 310 IPR013763 -
Vivi4g05566 356 SMART cyclin_7 124 208 IPR013763 -
Vivi4g05566 356 SUPERFAMILY Cyclin-like 217 342 IPR036915 -
Vivi4g05566 356 SUPERFAMILY Cyclin-like 75 214 IPR036915 -
Vivi4g05566 356 MobiDBLite consensus disorder prediction 43 79 - -
Vivi4g05566 356 PIRSF Cyclin_A_B_D_E 1 75 IPR046965 GO:0016538|GO:0044772
Vivi4g05566 356 PIRSF Cyclin_A_B_D_E 50 348 IPR046965 GO:0016538|GO:0044772
Vivi4g05566 356 Gene3D - 102 215 - -
Vivi4g05566 356 FunFam Cyclin A1 204 337 - -
Vivi4g05566 356 FunFam Mitotic cyclin 6 102 202 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g05566 Vivi-Chr4 190998566 191001899 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g05566 1 350 Core Cell Cycle Gene Families AT1G47230 57.025 1.47e-145 414
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi4g05566 4 190998566 191001899 Vivi4g05566 4 190998566 191001899 ECH
Vivi4g05566 4 190998566 191001899 Vivi3g01854 3 30038786 30040521 PCT