Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g05558 ATGGCGTCGAGTTTTGACCGATGGGAAAAAGATCCATTCTTTAACGCTGCTGAAGAAGTTCAGGAATCTGCAGATAGGATGGAATCTACATTTAGGACATGGATTCATGCCACCAAAGATAATTCAAGCATGTGGAACCCTAATGAACTCAGAAGAGATTTACTTACTACTCTTGGCACTGCTAAATGGCAGTTAGAGGAATTTCAACGCGAAATAAAGTTAAGTTATAGTAGAAACTCTGGTAATGACGCAAGAACTAGGCACCGAGATTTTATCACTGCTATGGAGGATAAGATAAAGAAAGTCGAGCTTTCGTTAAATGAAGCGTTCCCTTCGGGTGGCAAGGCGTCTCGGCCGTGGGTGTGTTTGGACGAAGGAGAAAAAGACGAGCTTGCTATGTTTCTTTCCGGAATGCCAGCTGCTGGAACTAACAATCAACGATTATGTGATAAAGATTCTGTTGTTAATTTGTCGAAGGATTTTCCTGTTTCAACTGGGCGTGGCGAAGCTAAGGAGGATGTGTCACACGGGTTTCGTAGGGTAGCTAGTGCTAGTGCTGATATTGGTTATTGGAAAATTTCAGTTAACGATGATCCGCAGCAGTTGAGTTCCTCCAGTGGTTCTTCTGGTGGTCCAATGCATAAGGTGCCAAGTTTATCGGGGTTTTTTAGTTCGGTTGAAACAATCTCGAAATTGAAGTGGCCGAGGAATGGTTATAGAAAACTGAAAACAGTGGATCATCATAAAGAAACTGATAGTGCACTAATTCCAATGGCTGAATTGAATAGGGGAAGCAATACCTGCCTTGAAAAAACTAAAAGTAGCCTCGATAGTTCGGATGAATGTTACAACAAGCAACTCTATGGATGGTGTGGTGCTATTCAGAGACAGCTTCAAAGGTCTCAATATCAAATGCAATACAGTCGGCTCGCACGAATAACTGTTTCCATTGTTATTCTCCTCTGCTTGATTGTTTTAATTGCATTCCACAAGATGTAG 999 0.4184 MASSFDRWEKDPFFNAAEEVQESADRMESTFRTWIHATKDNSSMWNPNELRRDLLTTLGTAKWQLEEFQREIKLSYSRNSGNDARTRHRDFITAMEDKIKKVELSLNEAFPSGGKASRPWVCLDEGEKDELAMFLSGMPAAGTNNQRLCDKDSVVNLSKDFPVSTGRGEAKEDVSHGFRRVASASADIGYWKISVNDDPQQLSSSSGSSGGPMHKVPSLSGFFSSVETISKLKWPRNGYRKLKTVDHHKETDSALIPMAELNRGSNTCLEKTKSSLDSSDECYNKQLYGWCGAIQRQLQRSQYQMQYSRLARITVSIVILLCLIVLIAFHKM 332
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g05558 332 Pfam Syntaxin 6, N-terminal 11 103 IPR015260 GO:0016020|GO:0048193
Vivi4g05558 332 SUPERFAMILY t-snare proteins 10 108 IPR010989 GO:0016020|GO:0016192
Vivi4g05558 332 FunFam Syntaxin 10 8 109 - -
Vivi4g05558 332 PANTHER OS05G0443700 PROTEIN 1 324 - -
Vivi4g05558 332 CDD SNARE_NTD_STX6-like 11 107 - -
Vivi4g05558 332 Gene3D - 9 109 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Vivi4g05558 Vivi-Chr4 190839036 190841546 Dispersed/Wgd
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi4g05558 4 190839036 190841546 Vivi4g05558 4 190839036 190841546 ECH
Vivi4g05558 4 190839036 190841546 Vivi3g01815 3 29331922 29334449 PCT