Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g05550 ATGGCTCTAGAAGCACTTAACTCACCCACCACTACTTCTACTACCCCAAAATTCACGTTCAATGAACCGTCTCTTCATCACTCTGAACCATGGACCAAACGAAAACGTTCAAAGCGTTCACGTTCATGCACCGAAGAAGAGTACCTCGCTCTCTGTCTCATCATGCTAGCTCGCGGAACCACCACCACCTCCACCACCAACCGCCACAGTTTCAAACCATTACCAACACCAACAACAATAACAACCGCCGACAACAACAGCACCAACATCAAACTAGGTTACAAATGTTCTGTGTGCAACAAAGAGTTCTCTTCTTATCAAGCACTTGGTGGACATAAAGCAAGTCACCGGAAACACTCTACCATCGGTGGTGATGACCATTCAACTTCCTCAAATTCGGCTAACACTGTCACTGTTGTAAGCGGTGGCGGTGTTAGATCTCATGAATGTTCGATTTGTCATAAGTCGTTTCCGACAGGACAGGCTTTGGGTGGACACAAACGTTGTCACTACGAAGGCGGTAGTGGTAGTGGTAGTGGTGGTGGTGCTGTAACTAACTCAGGTGTGGGGTCCACACATACTGTTTCTCATAGTCATAGTCATAGTCACCGAGGTTTCGATCTGAACATCCCGGCTTTTCCGGAGTTTGGTGACAATAAGGTCGGAGAAGACGAGGTTGAGAGTCCTCACCCTGTGATGATGATGAAGAAGAAGCCTCGTGTTTTCGTGGTGCCCAAGATTGAAATTCCTCATCACCAACAGTGA 765 0.4732 MALEALNSPTTTSTTPKFTFNEPSLHHSEPWTKRKRSKRSRSCTEEEYLALCLIMLARGTTTTSTTNRHSFKPLPTPTTITTADNNSTNIKLGYKCSVCNKEFSSYQALGGHKASHRKHSTIGGDDHSTSSNSANTVTVVSGGGVRSHECSICHKSFPTGQALGGHKRCHYEGGSGSGSGGGAVTNSGVGSTHTVSHSHSHSHRGFDLNIPAFPEFGDNKVGEDEVESPHPVMMMKKKPRVFVVPKIEIPHHQQ 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g05550 254 MobiDBLite consensus disorder prediction 179 196 - -
Vivi4g05550 254 Pfam C2H2-type zinc finger 148 171 - -
Vivi4g05550 254 Pfam C2H2-type zinc finger 94 118 - -
Vivi4g05550 254 SMART c2h2final6 148 170 IPR013087 -
Vivi4g05550 254 SMART c2h2final6 94 116 IPR013087 -
Vivi4g05550 254 ProSiteProfiles Zinc finger C2H2 type domain profile. 148 170 IPR013087 -
Vivi4g05550 254 MobiDBLite consensus disorder prediction 1 39 - -
Vivi4g05550 254 MobiDBLite consensus disorder prediction 1 26 - -
Vivi4g05550 254 SUPERFAMILY beta-beta-alpha zinc fingers 94 170 IPR036236 -
Vivi4g05550 254 ProSitePatterns Zinc finger C2H2 type domain signature. 96 116 IPR013087 -
Vivi4g05550 254 MobiDBLite consensus disorder prediction 174 206 - -
Vivi4g05550 254 ProSiteProfiles Zinc finger C2H2 type domain profile. 94 121 IPR013087 -
Vivi4g05550 254 ProSitePatterns Zinc finger C2H2 type domain signature. 150 170 IPR013087 -
Vivi4g05550 254 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 34 213 IPR044653 GO:0003700
Vivi4g05550 254 Gene3D Classic Zinc Finger 92 170 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g05550 Vivi-Chr4 190610135 190611280 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g05550 1 249 C2H2 Transcription Factor Family AT1G27730 50.769 2.03e-62 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vivi4g05550 zf-C2H2_6 2.9e-12 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi4g05550 4 190610135 190611280 Vivi3g01803 3 29221794 29222832 PCT