Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g05547 ATGGAACTCATAGGATCTTTCCCTGATGGAGAATGGGATTTCTTTAGCAAAATGTTTGCTAGTGAGGATCATGAACACTACTCTCAACAATTTCTTGATCAAAATTCTCTTCTTCTTGATGATGGATTGATGAACAATGAATCACAATCCACATTTTCCTCCGCGGAAATCGGTGAAAAAGAGTGTATGTTTTATTCTTTTGATCATGCTAATATCTCAAACTCACATTATATATCTCAATCTCAAGAGAATAGTTATGGTAGCAACTGTAGTCCTAATGATGATACTAATTACTATTTTAGTTATCCTAATCAAGTACTAGCCAATAATATGAATAGTTCTATATCCATGGATGAGAAACTTTTTGCTTCTTTTGTTACACCCTTTAATGAGATTGTAATGGAAGAGAATGTGAAATTGAATGAAGATGCTATTGGAAGTGATGGTCATGTTTTGAAGAAAAATGATTACATTAATACTCCAATAATGGAAGAACATGTTGATTTTCCAAACAAGCATGCGATGCAAATGCAACTCAAAAGGAAACTCGATGTCTTAGAAGATGAAGTTCCTCTCGAAGAAAAAGTTAACAACAATTCAGAGAGTCCGAAGAAAAAACCCCGTGTCTCAAAAAATGGCATGAAAAATGCAAGGTCTAAGAAGAAAATTATTGGTAACAATGAAGAGGAAAATGAAGAGATTAATAATAGCTCTAGTAGTAACATTTCTGAAGATGAAAATGGTTCTCAAGAAAATAGTGGAGGAACTACTCTCAACTCAAATGGGAAAACAAGAGCTAGTAGAGGATCAGCAACAGATCCACAAAGTCTCTATGCAAGGAAACGAAGAGAGAGGATAAATGAGAGACTAAGAATTCTACAGAATCTTGTACCAAATGGAACAAAGGTTGATATAAGTACAATGCTTGAAGAAGCAGTCAATTATGTGAAATTTTTGCAAGTTCAAATCAAGCTTTTGAGTTCTGATGATATGTGGATGTATGCACCACTGGCTTATAATGGACTTGACATTGGACTCAATCTCAACCTCAATGGTTCTTCATCACTATGA 1071 0.3436 MELIGSFPDGEWDFFSKMFASEDHEHYSQQFLDQNSLLLDDGLMNNESQSTFSSAEIGEKECMFYSFDHANISNSHYISQSQENSYGSNCSPNDDTNYYFSYPNQVLANNMNSSISMDEKLFASFVTPFNEIVMEENVKLNEDAIGSDGHVLKKNDYINTPIMEEHVDFPNKHAMQMQLKRKLDVLEDEVPLEEKVNNNSESPKKKPRVSKNGMKNARSKKKIIGNNEEENEEINNSSSSNISEDENGSQENSGGTTLNSNGKTRASRGSATDPQSLYARKRRERINERLRILQNLVPNGTKVDISTMLEEAVNYVKFLQVQIKLLSSDDMWMYAPLAYNGLDIGLNLNLNGSSSL 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g05547 356 FunFam Basic helix-loop-helix transcription factor 271 328 - -
Vivi4g05547 356 Gene3D - 272 328 IPR036638 GO:0046983
Vivi4g05547 356 SMART finulus 276 325 IPR011598 GO:0046983
Vivi4g05547 356 CDD bHLH_AtIND_like 271 333 - -
Vivi4g05547 356 Pfam Helix-loop-helix DNA-binding domain 280 320 IPR011598 GO:0046983
Vivi4g05547 356 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 270 335 IPR036638 GO:0046983
Vivi4g05547 356 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 85 342 - -
Vivi4g05547 356 MobiDBLite consensus disorder prediction 193 282 - -
Vivi4g05547 356 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 270 319 IPR011598 GO:0046983
Vivi4g05547 356 MobiDBLite consensus disorder prediction 230 274 - -
Vivi4g05547 356 MobiDBLite consensus disorder prediction 193 208 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g05547 Vivi-Chr4 190521106 190523141 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g05547 206 346 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G33880 65.248 3.45e-55 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vivi4g05547 HLH 1.2e-08 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi4g05547 4 190521106 190523141 Vivi4g05547 4 190521106 190523141 ECH