Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g05546 ATGGAGAATCTTCTTTCCGCAAATCATAAACAACCAAAGAGAGACTCACCACTCTCTTCCACAACCATGACCTCCGTTGAGCAGCAGCCTCTCAAGAAGCGAAAGCTTCACGACTCCCCGCCGCCACAACCGCCAGGAACCACCGCGCCCGTTCTTCAAACCCTACCTCCTCCACCTTTGTCTCAGGATGAAATTCTCGCCAAGCGCAGAAACAAAGACGCAATTCGAAACCTCTATGATGGTTACAAGCGAATTAAACGATGTCTCATTCAGAAACAAGCTCCCTCCACACCTGAACTTGATCAGAACTTTCTCGCTCTCATCGCTTCTTCCAGAGGTTGTCCGAGTGTACAAAGAATTGTGGCCGATTTAATTCCTCGATATGCTTGTCACTGTCCAACGGCTTTGGAAGCGGCGGCCAAAGTGGTTATCAATATGCATAACTGGAGTTTGGCATTGATCAGTAAGGAAGAGGATTCCAGTGGTATTGCATTTGAAACTGCTAAAGCCTGTATTTTTGGATTGGCTGATATTTGCCACGCTGCTTCTTCAGTAGCACCAACATCAGCTGTAGTTAGAGGAATTCGCTCAACAGTTTTTCAAAATGTGCTCACCTTTTTTGTTGCCTTATTTGAGGAAAAGGATTTCTTAAGGATGATTGACAAGAACTTCCTGAATATGCAAGATAATCCTGAGGTCTTTTCTGAATTGGAACGAAATATTTTAAATCAAGATGATTCTTCGTCGACTAAATTGTCCAAGTTCCGTACATTATGTATACTTAGGATATTTTTCTCTTGTCCGAAAGACTTGCTTGCAGCTTGTTTGGAACTCTTTGGAGCCACCACAAAAGAGGGAACTTCTAACGAAGGAAAGCGTTTTTTGAGCTTGGTAACTAGCATTCTTAATGATGAAGAAGCGGTTCACCTTTTGGGTAGAGCAAATGATAGACCTAAATCATGTAGTGATTATATTGGGGAAGGCATCAAAGAAATTGAGGTTGGTGAGAAAGTTATCACCGATGACAACCATATATCCGATACTATTCGAAAGAGCTGCTTGCTTATGCTGGTTCTTAACAAGGACCGCTCACTGCGGAATTGGACTATGCGTCGATGTAAAAAGTTACTTGACTCGCTCACTAGTGCTTCCCTGGAAACTACATCAATATTGCAAGAAATTCTTGGAATGTTCACTCAGCAGACCGAGATAGAAGACTGTCAAATAGATAGTGATGAAGATAAATCTGATTCTTCAATGTTCACGAATAGAAACTATGGAAATCCTAGGATCTCTGAGGAACATGAAAGTATTGGCGAAACATCACAAAAAGGTTCTCATTTTGATAATGGAGGGATATCAAGGTCTGTGGGTGTTGAGAAAGGTGACATGCCCCATGTTAGATGTCCCACACCTAGGGACTATGTAAGCCATCAGATATTCTCACCTACAGTTAGAACGGTGGTAGATCTTAGGAGTAATTCATTCGATGGTAGAAATGATTTCCCAATTGAGAAAAATCAAGTTATAAATACAAATTTCAATTCACCTCTGTCGAGGTCCTCTAGTGGAGCTGTCAGCAATGTTCTGGCTTCTCCGAATCATCATTTTATGTCACCAACTTCATTAACCAGAAGTCAAATTGTTTGGTGCTGTGACGGGGATCCCGCTGCTGTAGATGTTGTCGCTGCTTCAAATCAGCTATGGGTAGGTTGTGTGGCACCTGATATGCCTGAAAGCCATATTAGGTTTCAATTAGAGAGGTTTGGTCCTATTGAAAAGTTTATATTCTTCCCTTTGAAAGGATTTGCTTTAGTTGAGTACAGAAGGATTATTGATGCGGTAAAGGCTCGACACTTTGCACCTCAAAATTTTCCTTGCCGTGTAAAATTCATGGATATAGGACTTGGTACTAAGGGTGCAATGAATAGTGTGGCAGTTGGCTCTTGTTGTCATATTTATGTTGGAAATGTTTCCAGTCAATGGGCTAAGGATGAGATTCTTCATGAATCAAGGAAAGTAGTTTATAAGGGTCCTCTCACATTTATTGATCTTAGCTGTGAATGTGCATTACTTATGGAGTTTGAAACCCCTGAAGAAGCTGCCTCTGTTATGTTGCATCTGAGACAGCTCCGAAGAGAAAGAAGTAGTTATAACCCACATTTTGGTCCGGGAACAGTTAATGTTGTAAGTGGGCATGCTTATATGGATGGTGCAAGACCTTTGCCCACCCCTGCCCATCCGGACTTCAAGGCCAGCAACTCTGCTGGATCACCTCATTCTCGAACTTTACATGGGAGCCCTGCTGACAGTAGTCAAACAAGAATGTCTCACTTGTGTAATATATTAGCTTCATTGCGTGCGAAGTATAATATTAATCAAAACACAGGTCTCCATGATAATTATATGACTGGAAATAGTTTTGCTTCTTCCATGCGTGAGGAAGATGCGGTGCCATCCAGCACTCTGTGGATAACTATTCCCCATAATAGCTCCCAGTTCCTCACAGACGATGAGATAATGAGTATTTGCAACCTTGCTATTGGAAACTCTGGTTTCATTGCACGGTTGACACAAGCAAAAATTCACATGGGATGTGGTTGGTTTGTTGAATGTAGTAATGTTGATGGTGCAGTTTCCGTCTTAAAGAATCTGCGTGGTTGTCCAGGATTGTTCTTCCAAATAGAATTCAGCAAACCGGGAAATCAGAATGCTGTACCATTTTCAATTAAACCTGAAAACCATGCTATGGAGCTTGTTTCCCCCAGAATAAATGCTGAGAATCATAGTAGTGGAGTACCCGGTGCACCTCTCTCTCAGTCAAACTGGCAATACCCTGATTCTAGGGAGATATCAGAAGTTGGAGTAAGGAAACCTGATGGTTATGATCATTTATCGATGGATCCTCATCGAGGAAATGCTCCACATTTACACCCTGGAACACGTGGACCTTCCATTCCACCGCCACCACAACAAATTCAATCATCTCCTTTCACCCGCCCTGTTTATGCTCCTCCAAATGGGCCATGGGATCCTCATGGAATAAATAATCAGTTACCTGTCAACCATTTCCAGACAGCTGTAGTGCCAAATAATTTTAATGGCAGTCCTTTCATATCTGCTTCAGTAACTCCACTTGCTCAGATACAAGGAACTCCAATGCAATCCTATAACCAACAGATTCCTCCGTTAATTGTACCACCGCCTCTATCATCTTTGCCACCTCATCAGCCTGAAATGCCACCTCCTCACCCACATCCTCCTTCTCCTTCTCTGCCACCTCTACCCCAGACACAACCACCCCCGGTTCCTCCACCACCCGGTTCTCCTCCTCCACCTCCTCCACCCTTGCCTGTCCAAGAACCAGTCAATATGGAATGTTCGGAGCAGCCACTGCAGTATCAATGGCAGGGAAATCTCTGTAAAAGTGGAGTCAGCTACTGTACAATTAATGCATGCAGAGTAGATTCAAATATGTGCAGATACTCGAATGCCATACCCGAGCCTGCCGTATGGCCTACCAAATTAGACATGACTAAACGCACAGATTTGAGGCATGTGCAATCAACATTTGCTGCTACGCCATCTCATAGAAGGGAAGTTTGCCGTTTAATCCCATCTTCAACAAGTGATGACAAAAGGTTTCAGGATTTCGTATCATACTTAAAACAGAGGGGCTGTGCTGGAGTCATTAAAATTCCAGCTTCAAAATCCATATGGGCAAGGCTGCTATTTATACTTCCTCATTCACATGAAACGTGCTCGTTGCTGTCTATTGCACCCGATCCATCTGAGTGCCTTATTGCTTTGGTTTTACCCAAAGAAACAAACTTTGAGTGGGAATGA 3846 0.4293 MENLLSANHKQPKRDSPLSSTTMTSVEQQPLKKRKLHDSPPPQPPGTTAPVLQTLPPPPLSQDEILAKRRNKDAIRNLYDGYKRIKRCLIQKQAPSTPELDQNFLALIASSRGCPSVQRIVADLIPRYACHCPTALEAAAKVVINMHNWSLALISKEEDSSGIAFETAKACIFGLADICHAASSVAPTSAVVRGIRSTVFQNVLTFFVALFEEKDFLRMIDKNFLNMQDNPEVFSELERNILNQDDSSSTKLSKFRTLCILRIFFSCPKDLLAACLELFGATTKEGTSNEGKRFLSLVTSILNDEEAVHLLGRANDRPKSCSDYIGEGIKEIEVGEKVITDDNHISDTIRKSCLLMLVLNKDRSLRNWTMRRCKKLLDSLTSASLETTSILQEILGMFTQQTEIEDCQIDSDEDKSDSSMFTNRNYGNPRISEEHESIGETSQKGSHFDNGGISRSVGVEKGDMPHVRCPTPRDYVSHQIFSPTVRTVVDLRSNSFDGRNDFPIEKNQVINTNFNSPLSRSSSGAVSNVLASPNHHFMSPTSLTRSQIVWCCDGDPAAVDVVAASNQLWVGCVAPDMPESHIRFQLERFGPIEKFIFFPLKGFALVEYRRIIDAVKARHFAPQNFPCRVKFMDIGLGTKGAMNSVAVGSCCHIYVGNVSSQWAKDEILHESRKVVYKGPLTFIDLSCECALLMEFETPEEAASVMLHLRQLRRERSSYNPHFGPGTVNVVSGHAYMDGARPLPTPAHPDFKASNSAGSPHSRTLHGSPADSSQTRMSHLCNILASLRAKYNINQNTGLHDNYMTGNSFASSMREEDAVPSSTLWITIPHNSSQFLTDDEIMSICNLAIGNSGFIARLTQAKIHMGCGWFVECSNVDGAVSVLKNLRGCPGLFFQIEFSKPGNQNAVPFSIKPENHAMELVSPRINAENHSSGVPGAPLSQSNWQYPDSREISEVGVRKPDGYDHLSMDPHRGNAPHLHPGTRGPSIPPPPQQIQSSPFTRPVYAPPNGPWDPHGINNQLPVNHFQTAVVPNNFNGSPFISASVTPLAQIQGTPMQSYNQQIPPLIVPPPLSSLPPHQPEMPPPHPHPPSPSLPPLPQTQPPPVPPPPGSPPPPPPPLPVQEPVNMECSEQPLQYQWQGNLCKSGVSYCTINACRVDSNMCRYSNAIPEPAVWPTKLDMTKRTDLRHVQSTFAATPSHRREVCRLIPSSTSDDKRFQDFVSYLKQRGCAGVIKIPASKSIWARLLFILPHSHETCSLLSIAPDPSECLIALVLPKETNFEWE 1281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g05546 1281 MobiDBLite consensus disorder prediction 740 773 - -
Vivi4g05546 1281 MobiDBLite consensus disorder prediction 1058 1123 - -
Vivi4g05546 1281 MobiDBLite consensus disorder prediction 926 945 - -
Vivi4g05546 1281 SUPERFAMILY RNA-binding domain, RBD 566 706 IPR035979 GO:0003676
Vivi4g05546 1281 MobiDBLite consensus disorder prediction 1 29 - -
Vivi4g05546 1281 PANTHER ACTIVATING SIGNAL COINTEGRATOR 1 COMPLEX SUBUNIT 2 ASC-1 COMPLEX SUBUNIT P100 21 1232 - -
Vivi4g05546 1281 MobiDBLite consensus disorder prediction 754 773 - -
Vivi4g05546 1281 SMART rrm1_1 567 630 IPR000504 GO:0003723
Vivi4g05546 1281 Pfam SPOC domain 1129 1271 IPR012921 -
Vivi4g05546 1281 CDD SPOC_FPA-like 1135 1273 - -
Vivi4g05546 1281 MobiDBLite consensus disorder prediction 1062 1121 - -
Vivi4g05546 1281 MobiDBLite consensus disorder prediction 958 993 - -
Vivi4g05546 1281 MobiDBLite consensus disorder prediction 40 57 - -
Vivi4g05546 1281 Gene3D - 556 639 IPR012677 -
Vivi4g05546 1281 CDD RRM_SF 568 630 - -
Vivi4g05546 1281 MobiDBLite consensus disorder prediction 410 431 - -
Vivi4g05546 1281 MobiDBLite consensus disorder prediction 1 62 - -
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi4g05546 4 190505117 190515063 Vivi4g05546 4 190505117 190515063 ECH