Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g04523 ATGATGGATAATATTCTTGGTCTTCTCAAACTTCGTATCAAAAGAGGAATCAATCTTGCCATTCGTGATGCTAATTCCAGTGATCCTTATGTTGTTGTCCACATGGGTGATCAGAAGCTGAAGACTCGAGTAGTGAAAAACAATTGCAACCCTGAATGGAACGAAGAGTTAACCCTTTCAATAAGGGATATTAAAACTCCAATACGTCTCACAGTTTTTGACAAAGACACATTCTCCGTAGATGACAAAATGGGTGATGCAGATGTAGACTTGAAACCATATGCTCAAGCTATACAAATGAAGTTGGCTACTCTTCCAGATGGTTGTGCAATCAAGAGGGTTCAAGCAAATAGGACTAATTGTCTTGCTGAAGAGAGTAGTTGTATTTGGAAAAGTGGAAAGATAATTCAAGAAATGATTCTAAGATTGAGAAATGTTGAGAGTGGGGAATTGGTTGTTGAAATTGAGTGGGTGGATATTCCTGGTAGCACAGGTCTATTAGGGGGACATAGTTAA 516 0.3857 MMDNILGLLKLRIKRGINLAIRDANSSDPYVVVHMGDQKLKTRVVKNNCNPEWNEELTLSIRDIKTPIRLTVFDKDTFSVDDKMGDADVDLKPYAQAIQMKLATLPDGCAIKRVQANRTNCLAEESSCIWKSGKIIQEMILRLRNVESGELVVEIEWVDIPGSTGLLGGHS 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g04523 171 ProSiteProfiles C2 domain profile. 1 105 IPR000008 -
Vivi4g04523 171 Gene3D C2 domain 3 164 IPR035892 -
Vivi4g04523 171 SMART C2_3c 8 103 IPR000008 -
Vivi4g04523 171 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 3 92 IPR035892 -
Vivi4g04523 171 Pfam C2 domain 8 93 IPR000008 -
Vivi4g04523 171 PANTHER PROTEIN C2-DOMAIN ABA-RELATED 4 4 163 IPR044562 -
Vivi4g04523 171 CDD C2_ArfGAP 6 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g04523 Vivi-Chr4 172535236 172537820 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g04523 39 166 C2H2 Transcription Factor Family AT1G70790 66.154 2.59e-60 182
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi4g04523 4 172535236 172537820 Vivi4g04523 4 172535236 172537820 ECH
Vivi4g04523 4 172535236 172537820 Vivi4g00356 4 7913352 7914809 ECH
Vivi4g04523 4 172535236 172537820 Vivi3g04077 3 71087739 71089568 ECH