Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g02561 ATGGCGCATGCTGATGTGAGAGACTTACAGCTCACTTTTCTACCCGCCGGCCGGAAAATCACCGCCACCGATGACTCCGATGACTTGGAACATGCACTGCTCCTTGACTCCCGCGACGGAGTTGACGACGAGAGAAGAAGAATTCAGGTGAGAATCTCCGGTATGACATGCACCGCTTGCTCTAATTCCATCGAATCAGCTCTGAAAGCGGTTGACGGAGTTCTCAGTGCTTCCGTTGCTCTACTGCAGAACAAAGCTGACGTGGTTTTCAACCCTGCTATGCTTAAGGATGAAGACATTAAAAATGCAATTGAAGGTGCAGGGTTCGAAGCAGATATATTACCCGACTCCAATGGACTTGGAAATACTCCACATGAAACCCTGGTAGGACAGTTCACAATTGGAGGTATGACATGTGCAGCCTGTGTAAATTCTGTTGAAGGTATTTTAAGAAGTCTTCCAGGGGTTAAAAAGGCCGTGGTAGCTTTGGCTACTTCGTTAGGCGAAGTTGAATATGATCCAAGTGTAATTAGTAAAGATGATATAGTCAATGCAATCGAAGATTCTGGCTTTGAAGCCTCGTTTGTACAGAGCAATGAGCAGGATAAAATAATTTTTGGAGTTGTTGGTGCGTACAGTCTAATAGATGCACAAGTCATAGAAGACATGCTTAGTAACATGAAAGGAGTAAGGCAGTTTAATTTTGACCGGATATCGGGTGAATTAGATGTTCTATTCGATCCTCAAGTTCTCAGTCCAAGGTCCTTAGTTGATGGGATCCACATGGAAAGCAATGGAAAGTTTGAATTACATGTTAAAAGCCCTTATTCAAGGATGGCTTCTAAAGTTGTTGAAGAAACCTCAACTATATTTCGGGTCTTTATCTCCAGCCTTTTACTTAGTGTTCCCCTCTTCTTCATGAAGGTAGTTTGTCCTCATATTCCATTTATGTATTCCTTGTTACTTCGGCGATGTGGGCCTTTTCTCATGCGTGATTGGGTGAAATGGGCATTAGTTAGTGTCATCCAATTTGGAATTGGGAAGCGCTTTTATATTGCAGCTGGAAGGGCTCTTAGAAATGGTTCAACAAACATGGATGTCTTGATTGTTGTGGGAACTACCACTTCTTACGTTTATTCTGTTTATGCTCTTCTATATGGTGCTCTTACTGGATTTTGGTCCCCAACTTACTTTGAAACAAGTGCTATGCTTATAACATTTGTTTTGTTGGGGAAGTATTTGGAAGTCCTTGCTAAGGGAAAGACATCTGATGCCATCAAGAAATTAGTAGAACTTGCTCCTGCAACAGCTTTATTAATTATTAATGATAAAGATGGTAAGTCTTTTGAAGAAAGAGAAATTGATTCTTTGCTTGTTCAACCTGGTGACACATTGAAAACTCTTCCTGGTACAAAGATTCCTGCTGATGGTATTGTTACTTGGGGCTCAAGTTATGTAAATGAGAGCATGGTAACCGGTGAATCTGTACCTGTTTTGAAGGAGGTGAATGGTTCTGTTATTGGGGGTACAATAAATATGCATGGCGTCCTTCACATTAAAGTTACTAAAGTAGGATCTGATACAGTTTTGAGTCAGATAATAAGTTTGGTTGAAACAGCACAGATGTCCAAAGCTCCCATTCAGAAGTTTGCTGATTATGTAGCAAGCATATTTGTTCCGACCGTTGTTTCTTTGGCCTTGTTGACATTTTTGGGTTGGTATATTGCTGGAGCTGTTGGAGCTTACCCAGAAACATGGCTGCCAGAAAATGGAAATCACTTTGTGTTTGCCCTAATGTTCTCAATATCTGTAGTGGTGATTGCATGTCCATGTGCACTTGGCCTAGCAACACCAACAGCCGTCATGGTGGGAACAGGGGTTGGGGCTAACAATGGTGTATTAATTAAAGGAGGAGATGCCTTGGAAAGGGCTCAGATGGTGAAGTATGTGATATTTGATAAAACAGGCACTCTAACTCAGGGAAAAGCCAGTGTTACTACTTCCAAAGTATTCACTGGAATGCAACGTGGGGAATTTCTTAAATTGGTGGCTTCTGCTGAGGCTAGCAGTGAACACCCACTAGCAAAAGCAGTATTAGCATATGCACGCCATTTTCATTTCTTCGATGATTCTTCAGCTACTACACAGAATGATGTGAAGTCTGGGTGGCTTTTTGATGTCACAGACTTCTCTGCTCTCCCAGGAAGAGGTGTTCGATGCTCTATAAACGGGAGGCATATTTTGGTTGGCAACAGGACGTTGATGGTGGAAAATGATATTGATATTTCAAAAGAAGTGGAAAATTTTGTTGTTGAGCTGGAACGAAATGCGCAGACAGGGATACTAGTATCATATGATAATATATTGATCGGAGCTTTGGGGGTTGCAGACCCACTAAAAAGAGAAGCTTCTGTGGTTATAGAGCGCCTCCAGAAAATGGGTGTCATACCTGTTATGGTTACAGGAGATAACTGGAGAACAGCTAATGCTGTTGCCAAGGAGGTTGGCATCCAAGATGTGAGAGCAGAGGTGATGCCTGCGGGGAAAGCTGACATTGTTCGTTTATTCCAAATGGATGGAAGCATAGTTGCAATGGTGGGCGATGGTATCAACGATTCTCCAGCATTAGCTGCTGCTGACGTTGGCATGGCAATTGGGGCTGGAACTGATGTTGCAATAGAAGCTGCTAACTTTGTGTTGATGAGAAATAACTTGGAAGATGTGATCACAGCCATCCATCTTTCTCGGAAAACGTTTGACCGTATTAGATTGAATTACGTATTCGCGATGGCTTATAATGTCGTTGCTATACCAGTTGCAGCTGGGGTTTTATATCCTTCATTAGGTATCAAGCTGCCACCATGGGTTTCTGGTGCATGCATGGCTCTGTCTTCTGTAAGTGTTGTATGCTCTTCTTTGCTTCTTAAAAGGTATAGAAGACCCATACTTCCCACAGTTCCTGAAATAGTTGTAGAATAA 2979 0.4226 MAHADVRDLQLTFLPAGRKITATDDSDDLEHALLLDSRDGVDDERRRIQVRISGMTCTACSNSIESALKAVDGVLSASVALLQNKADVVFNPAMLKDEDIKNAIEGAGFEADILPDSNGLGNTPHETLVGQFTIGGMTCAACVNSVEGILRSLPGVKKAVVALATSLGEVEYDPSVISKDDIVNAIEDSGFEASFVQSNEQDKIIFGVVGAYSLIDAQVIEDMLSNMKGVRQFNFDRISGELDVLFDPQVLSPRSLVDGIHMESNGKFELHVKSPYSRMASKVVEETSTIFRVFISSLLLSVPLFFMKVVCPHIPFMYSLLLRRCGPFLMRDWVKWALVSVIQFGIGKRFYIAAGRALRNGSTNMDVLIVVGTTTSYVYSVYALLYGALTGFWSPTYFETSAMLITFVLLGKYLEVLAKGKTSDAIKKLVELAPATALLIINDKDGKSFEEREIDSLLVQPGDTLKTLPGTKIPADGIVTWGSSYVNESMVTGESVPVLKEVNGSVIGGTINMHGVLHIKVTKVGSDTVLSQIISLVETAQMSKAPIQKFADYVASIFVPTVVSLALLTFLGWYIAGAVGAYPETWLPENGNHFVFALMFSISVVVIACPCALGLATPTAVMVGTGVGANNGVLIKGGDALERAQMVKYVIFDKTGTLTQGKASVTTSKVFTGMQRGEFLKLVASAEASSEHPLAKAVLAYARHFHFFDDSSATTQNDVKSGWLFDVTDFSALPGRGVRCSINGRHILVGNRTLMVENDIDISKEVENFVVELERNAQTGILVSYDNILIGALGVADPLKREASVVIERLQKMGVIPVMVTGDNWRTANAVAKEVGIQDVRAEVMPAGKADIVRLFQMDGSIVAMVGDGINDSPALAAADVGMAIGAGTDVAIEAANFVLMRNNLEDVITAIHLSRKTFDRIRLNYVFAMAYNVVAIPVAAGVLYPSLGIKLPPWVSGACMALSSVSVVCSSLLLKRYRRPILPTVPEIVVE 992
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g02561 992 CDD HMA 131 194 IPR006121 GO:0046872
Vivi4g02561 992 CDD HMA 49 111 IPR006121 GO:0046872
Vivi4g02561 992 NCBIfam copper ion binding protein 48 111 IPR006122 GO:0005507
Vivi4g02561 992 NCBIfam copper ion binding protein 131 193 IPR006122 GO:0005507
Vivi4g02561 992 FunFam Probable copper-transporting ATPase HMA5 773 923 - -
Vivi4g02561 992 Pfam E1-E2 ATPase 432 630 - -
Vivi4g02561 992 NCBIfam HAD-IC family P-type ATPase 404 678 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vivi4g02561 992 NCBIfam HAD-IC family P-type ATPase 737 946 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vivi4g02561 992 Gene3D - 130 195 - -
Vivi4g02561 992 Pfam haloacid dehalogenase-like hydrolase 647 880 - -
Vivi4g02561 992 PRINTS H+-transporting ATPase (proton pump) signature 897 922 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vivi4g02561 992 PRINTS H+-transporting ATPase (proton pump) signature 838 854 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vivi4g02561 992 PRINTS H+-transporting ATPase (proton pump) signature 866 882 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vivi4g02561 992 ProSitePatterns Heavy-metal-associated domain. 52 82 IPR017969 GO:0046872
Vivi4g02561 992 Pfam Heavy-metal-associated domain 50 110 IPR006121 GO:0046872
Vivi4g02561 992 Pfam Heavy-metal-associated domain 132 192 IPR006121 GO:0046872
Vivi4g02561 992 Gene3D - 45 116 - -
Vivi4g02561 992 PRINTS P-type cation-transporting ATPase superfamily signature 866 885 - -
Vivi4g02561 992 PRINTS P-type cation-transporting ATPase superfamily signature 487 501 - -
Vivi4g02561 992 PRINTS P-type cation-transporting ATPase superfamily signature 813 823 - -
Vivi4g02561 992 PRINTS P-type cation-transporting ATPase superfamily signature 889 901 - -
Vivi4g02561 992 PRINTS P-type cation-transporting ATPase superfamily signature 791 802 - -
Vivi4g02561 992 PRINTS P-type cation-transporting ATPase superfamily signature 651 665 - -
Vivi4g02561 992 ProSitePatterns E1-E2 ATPases phosphorylation site. 653 659 IPR018303 -
Vivi4g02561 992 Gene3D - 618 923 IPR023214 -
Vivi4g02561 992 ProSitePatterns Heavy-metal-associated domain. 134 163 IPR017969 GO:0046872
Vivi4g02561 992 SUPERFAMILY HMA, heavy metal-associated domain 128 200 IPR036163 GO:0046872
Vivi4g02561 992 NCBIfam heavy metal translocating P-type ATPase 365 975 IPR027256 GO:0006812|GO:0016020|GO:0019829
Vivi4g02561 992 SUPERFAMILY HAD-like 650 972 IPR036412 -
Vivi4g02561 992 SFLD p-type atpase 633 918 IPR044492 -
Vivi4g02561 992 CDD P-type_ATPase_Cu-like 294 962 - -
Vivi4g02561 992 ProSiteProfiles Heavy-metal-associated domain profile. 46 112 IPR006121 GO:0046872
Vivi4g02561 992 ProSiteProfiles Heavy-metal-associated domain profile. 128 194 IPR006121 GO:0046872
Vivi4g02561 992 FunFam Copper-exporting P-type ATPase A 44 114 - -
Vivi4g02561 992 Gene3D - 746 797 IPR023299 GO:0000166
Vivi4g02561 992 Gene3D - 658 745 IPR023299 GO:0000166
Vivi4g02561 992 Gene3D - 419 541 - -
Vivi4g02561 992 FunFam Copper-transporting ATPase RAN1 658 745 - -
Vivi4g02561 992 SUPERFAMILY HMA, heavy metal-associated domain 43 115 IPR036163 GO:0046872
Vivi4g02561 992 FunFam Copper-transporting ATPase 1, putative 419 541 - -
Vivi4g02561 992 FunFam Copper-exporting P-type ATPase 746 797 - -
Vivi4g02561 992 FunFam Copper-exporting P-type ATPase A 126 196 - -
Vivi4g02561 992 SUPERFAMILY Calcium ATPase, transmembrane domain M 389 941 IPR023298 -
Vivi4g02561 992 PANTHER P-TYPE CATION-TRANSPORTING ATPASE 38 981 - -
Vivi4g02561 992 SFLD C1.7: P-type atpase like 633 918 - -
Vivi4g02561 992 SUPERFAMILY Calcium ATPase, transduction domain A 451 537 IPR008250 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g02561 Vivi-Chr4 124378966 124386586 Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi4g02561 4 124378966 124386586 Vivi4g02561 4 124378966 124386586 ECH