Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g00527 ATGAATGGTGAAGGTGACATGTGTGTTAAAGATTCATGTTTCATGCTCTTTGGTAAGAAGATTCCGGTGCCGGAATTTCATCCTCCGGTGAGTTCTCAGATTCAGGCCAATTCTACAACCATGAAATCAAAGAATTCTTCTAATGAAGAAAATGAATCAAAAGTTACTTCCACTACTGTGGAAGATAACAACATTGAAACAAGCAGCAAAGAACAAGACAAAGTCCTAAAGAAACCGGACAAGATTGTTCAGTGTCCGAGATGCAACAGTTTCGATACGAAATTTTGTTATTTCAACAATTACAATGTCAATCAGCCTCGTCATTTCTGTCGGAGCTGTCATAGGTATTGGACAGCCGGTGGAACGATGAGGAACGTTGCTGTCGGTGCAGGGAGACGGAAGAACAAGCATATCACTAATGATAACGGTATCGTCCTTAAATTCGGTCGAGGAAATGGCTCTCTTGACGAGTCAAGAACGCCGATGGTTAATCTTATGAACCAAAAGAGAAACGTTGATGCAGGTAATGGTAACAATTGTAGAGAAAACGGAGATGAAGAATCATCGTTATGTTTATCGTCTGTGACGAATGGATATACTCGAGGAAACGAGTTATCCGAATCCGAACATAATAGGTCGAAACAGTTTCAGAGTTACCCTTCATCTTCATGGATGATTCCATTGAATCAAAGGTGGAACAATGTTACTTCCATGGTTCAATCTTCAATGCAGATGTGTAACCCTTTTGGGATTGATCCTAATCAAATGCAATGGTGCCACGCGCCGATGGTCACGGTTACGAACATTTTCACACCAAACATTGGGTTGCAATTTGTTCCTGGATCATATGGAAATGGGAATGTTTCAATTGGTTCAAATGGTTGCATTTCACCTTCTTCATCAACTACTAGTAACAGTTTTTGTGAAGGTAATGGATCACCAATCCTTGGCAAACACACTAGAGATTCTGTTTTGTTTGATGAAGAGAAATCATAA 996 0.4006 MNGEGDMCVKDSCFMLFGKKIPVPEFHPPVSSQIQANSTTMKSKNSSNEENESKVTSTTVEDNNIETSSKEQDKVLKKPDKIVQCPRCNSFDTKFCYFNNYNVNQPRHFCRSCHRYWTAGGTMRNVAVGAGRRKNKHITNDNGIVLKFGRGNGSLDESRTPMVNLMNQKRNVDAGNGNNCRENGDEESSLCLSSVTNGYTRGNELSESEHNRSKQFQSYPSSSWMIPLNQRWNNVTSMVQSSMQMCNPFGIDPNQMQWCHAPMVTVTNIFTPNIGLQFVPGSYGNGNVSIGSNGCISPSSSTTSNSFCEGNGSPILGKHTRDSVLFDEEKS 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g00527 331 Pfam Dof domain, zinc finger 80 137 IPR003851 GO:0003677|GO:0006355
Vivi4g00527 331 PANTHER CYCLIC DOF FACTOR 2 10 324 IPR045174 GO:0003700|GO:0006355
Vivi4g00527 331 MobiDBLite consensus disorder prediction 30 65 - -
Vivi4g00527 331 ProSiteProfiles Zinc finger Dof-type profile. 83 137 IPR003851 GO:0003677|GO:0006355
Vivi4g00527 331 MobiDBLite consensus disorder prediction 27 73 - -
Vivi4g00527 331 ProSitePatterns Zinc finger Dof-type signature. 85 121 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g00527 Vivi-Chr4 11654582 11656294 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g00527 9 200 C2C2-Dof Transcription Factor Family AT5G62430 41.667 4.63e-40 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Vivi4g00527 zf-Dof 6e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g00527 - - vvo:131598823 645.966
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi4g00527 4 11654582 11656294 Vivi4g00527 4 11654582 11656294 ECH