Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g00526 ATGAATGGTGAAGGTGACATGTGTGTTAAAGATTCATGTTTCATGCTCTTTGGTAAGAAGATTCCGAAATCAAAGAATTCTTCTAATGAAGAAAATGAATCAAAAGTTACTTCCACTACTGTGGAAGATAACAACATTGAAACAAGCAGCAAAGAACAAGACAAAGTCCTAAAGAAACCGGACAAGATTGTTCAGTGTCCGAGATGCAACAGTTTCGATACGAAATTTTGTTATTTCAACAATTACAATGTCAATCAGCCTCGTCATTTCTGTCGGAGCTGTCATAGGTATTGGACAGCCGGTGGAACGATGAGGAACGTTGCTGTCGGTGCAGGGAGACGGAAGAACAAGCATATCACTAATGATAACGGTATCGTCCTTAAATTCGGTCGAGGAAATGGCTCTCTTGACGAGTCAAGAACGCCGATGGTTAATCTTATGAACCAAAAGAGAAACGTTGATGCAGGTAATGGTAACAATTGTAGAGAAAACGGAGATGAAGAATCATCGTTATGTTTATCGTCTGTGACGAATGGATATACTCGAGGAAACGAGTTATCCGAATCCGAACATAATAGGTCGAAACAGTTTCAGAGTTACCCTTCATCTTCATGGATGATTCCATTGAATCAAAGGTGGAACAATGTTACTTCCATGGTTCAATCTTCAATGCAGATGTGTAACCCTTTTGGGATTGATCCTAATCAAATGCAATGGTGCCACGCGCCGATGGTCACGGTTACGAACATTTTCACACCAAACATTGGGTTGCAATTTGTTCCTGGATCATATGGAAATGGGAATGTTTCAATTGGTTCAAATGGTTGCATTTCACCTTCTTCATCAACTACTAGTAACAGTTTTTGTGAAGGTAATGGATCACCAATCCTTGGCAAACACACTAGAGATTCTGTTTTGTTTGATGAAGAGAAATCATAA 939 0.3951 MNGEGDMCVKDSCFMLFGKKIPKSKNSSNEENESKVTSTTVEDNNIETSSKEQDKVLKKPDKIVQCPRCNSFDTKFCYFNNYNVNQPRHFCRSCHRYWTAGGTMRNVAVGAGRRKNKHITNDNGIVLKFGRGNGSLDESRTPMVNLMNQKRNVDAGNGNNCRENGDEESSLCLSSVTNGYTRGNELSESEHNRSKQFQSYPSSSWMIPLNQRWNNVTSMVQSSMQMCNPFGIDPNQMQWCHAPMVTVTNIFTPNIGLQFVPGSYGNGNVSIGSNGCISPSSSTTSNSFCEGNGSPILGKHTRDSVLFDEEKS 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g00526 312 MobiDBLite consensus disorder prediction 31 46 - -
Vivi4g00526 312 Pfam Dof domain, zinc finger 61 118 IPR003851 GO:0003677|GO:0006355
Vivi4g00526 312 PANTHER CYCLIC DOF FACTOR 2 12 305 IPR045174 GO:0003700|GO:0006355
Vivi4g00526 312 MobiDBLite consensus disorder prediction 22 54 - -
Vivi4g00526 312 ProSitePatterns Zinc finger Dof-type signature. 66 102 IPR003851 GO:0003677|GO:0006355
Vivi4g00526 312 ProSiteProfiles Zinc finger Dof-type profile. 64 118 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g00526 Vivi-Chr4 11654582 11656299 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g00526 9 181 C2C2-Dof Transcription Factor Family AT5G62430 45.161 7.60e-40 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Vivi4g00526 zf-Dof 5.4e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g00526 - - vvo:131598823 602.053